Analysis of interatomic Contacts of Structural Units in PDB entry:
1E6V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1E6V entry

There are 6 chains in PDB entry 1E6V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 8	ALA 552
B	ASP 7	LYS 442
C	PHE 7	GLU 254
D	LEU 8	ALA 552
E	ASP 7	LYS 442
F	PHE 7	GLU 254

There are140 helices in PDB entry 1E6V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	9	17	Right-handed alpha
Helix 2	2	A	32	36	Right-handed 310
Helix 3	3	A	37	55	Right-handed alpha
Helix 4	4	A	87	89	Right-handed 310
Helix 5	5	A	90	93	Right-handed 310
Helix 6	6	A	94	106	Right-handed alpha
Helix 7	7	A	112	122	Right-handed alpha
Helix 8	8	A	128	143	Right-handed alpha
Helix 9	9	A	172	177	Right-handed alpha
Helix 10	10	A	180	183	Right-handed 310
Helix 11	11	A	186	191	Right-handed alpha
Helix 12	12	A	192	204	Right-handed alpha
Helix 13	13	A	214	221	Right-handed alpha
Helix 14	14	A	222	243	Right-handed alpha
Helix 15	15	A	250	260	Right-handed alpha
Helix 16	16	A	271	275	Right-handed 310
Helix 17	17	A	280	284	Right-handed 310
Helix 18	18	A	285	293	Right-handed alpha
Helix 19	19	A	294	299	Right-handed alpha
Helix 20	20	A	302	320	Right-handed alpha
Helix 21	21	A	321	327	Right-handed alpha
Helix 22	22	A	333	339	Right-handed alpha
Helix 23	23	A	344	361	Right-handed alpha
Helix 24	24	A	369	391	Right-handed alpha
Helix 25	25	A	391	398	Right-handed alpha
Helix 26	26	A	400	421	Right-handed alpha
Helix 27	27	A	422	442	Right-handed alpha
Helix 28	28	A	450	462	Right-handed alpha
Helix 29	29	A	470	474	Right-handed 310
Helix 30	30	A	478	482	Right-handed 310
Helix 31	31	A	487	503	Right-handed alpha
Helix 32	32	A	509	516	Right-handed alpha
Helix 33	33	A	527	537	Right-handed alpha
Helix 34	34	A	546	550	Right-handed 310
Helix 35	35	B	26	29	Right-handed 310
Helix 36	36	B	33	45	Right-handed alpha
Helix 37	37	B	51	61	Right-handed alpha
Helix 38	38	B	79	81	Right-handed 310
Helix 39	39	B	82	95	Right-handed alpha
Helix 40	40	B	108	110	Right-handed 310
Helix 41	41	B	118	123	Right-handed alpha
Helix 42	42	B	130	145	Right-handed alpha
Helix 43	43	B	150	153	Right-handed 310
Helix 44	44	B	154	163	Right-handed alpha
Helix 45	45	B	182	186	Right-handed 310
Helix 46	46	B	191	195	Right-handed 310
Helix 47	47	B	197	205	Right-handed alpha
Helix 48	48	B	208	227	Right-handed alpha
Helix 49	49	B	231	233	Right-handed 310
Helix 50	50	B	234	247	Right-handed alpha
Helix 51	51	B	251	261	Right-handed alpha
Helix 52	52	B	265	280	Right-handed alpha
Helix 53	53	B	299	323	Right-handed alpha
Helix 54	54	B	327	342	Right-handed alpha
Helix 55	55	B	347	350	Right-handed 310
Helix 56	56	B	351	363	Right-handed alpha
Helix 57	57	B	372	376	Right-handed 310
Helix 58	58	B	390	400	Right-handed alpha
Helix 59	59	B	413	420	Right-handed alpha
Helix 60	60	B	423	428	Right-handed alpha
Helix 61	61	B	428	441	Right-handed alpha
Helix 62	62	C	13	22	Right-handed alpha
Helix 63	63	C	36	44	Right-handed alpha
Helix 64	64	C	59	63	Right-handed 310
Helix 65	65	C	77	83	Right-handed alpha
Helix 66	66	C	101	113	Right-handed alpha
Helix 67	67	C	131	144	Right-handed alpha
Helix 68	68	C	210	216	Right-handed alpha
Helix 69	69	C	227	230	Right-handed 310
Helix 70	70	C	231	251	Right-handed alpha
Helix 71	71	D	9	17	Right-handed alpha
Helix 72	72	D	32	36	Right-handed 310
Helix 73	73	D	37	55	Right-handed alpha
Helix 74	74	D	87	89	Right-handed 310
Helix 75	75	D	90	93	Right-handed 310
Helix 76	76	D	94	106	Right-handed alpha
Helix 77	77	D	112	122	Right-handed alpha
Helix 78	78	D	128	143	Right-handed alpha
Helix 79	79	D	172	177	Right-handed alpha
Helix 80	80	D	180	183	Right-handed 310
Helix 81	81	D	186	191	Right-handed alpha
Helix 82	82	D	192	204	Right-handed alpha
Helix 83	83	D	214	221	Right-handed alpha
Helix 84	84	D	222	243	Right-handed alpha
Helix 85	85	D	250	260	Right-handed alpha
Helix 86	86	D	271	275	Right-handed 310
Helix 87	87	D	280	284	Right-handed 310
Helix 88	88	D	285	293	Right-handed alpha
Helix 89	89	D	294	299	Right-handed alpha
Helix 90	90	D	302	320	Right-handed alpha
Helix 91	91	D	321	327	Right-handed alpha
Helix 92	92	D	333	339	Right-handed alpha
Helix 93	93	D	344	361	Right-handed alpha
Helix 94	94	D	369	391	Right-handed alpha
Helix 95	95	D	391	398	Right-handed alpha
Helix 96	96	D	400	421	Right-handed alpha
Helix 97	97	D	422	442	Right-handed alpha
Helix 98	98	D	450	462	Right-handed alpha
Helix 99	99	D	470	474	Right-handed 310
Helix 100	100	D	478	482	Right-handed 310
Helix 101	101	D	487	503	Right-handed alpha
Helix 102	102	D	509	516	Right-handed alpha
Helix 103	103	D	527	537	Right-handed alpha
Helix 104	104	D	546	550	Right-handed 310
Helix 105	105	E	26	29	Right-handed 310
Helix 106	106	E	33	45	Right-handed alpha
Helix 107	107	E	51	61	Right-handed alpha
Helix 108	108	E	79	81	Right-handed 310
Helix 109	109	E	82	95	Right-handed alpha
Helix 110	110	E	108	110	Right-handed 310
Helix 111	111	E	118	123	Right-handed alpha
Helix 112	112	E	130	145	Right-handed alpha
Helix 113	113	E	150	153	Right-handed 310
Helix 114	114	E	154	163	Right-handed alpha
Helix 115	115	E	182	186	Right-handed 310
Helix 116	116	E	191	195	Right-handed 310
Helix 117	117	E	197	205	Right-handed alpha
Helix 118	118	E	208	227	Right-handed alpha
Helix 119	119	E	231	233	Right-handed 310
Helix 120	120	E	234	247	Right-handed alpha
Helix 121	121	E	251	261	Right-handed alpha
Helix 122	122	E	265	280	Right-handed alpha
Helix 123	123	E	299	323	Right-handed alpha
Helix 124	124	E	327	342	Right-handed alpha
Helix 125	125	E	347	350	Right-handed 310
Helix 126	126	E	351	363	Right-handed alpha
Helix 127	127	E	372	376	Right-handed 310
Helix 128	128	E	390	400	Right-handed alpha
Helix 129	129	E	413	420	Right-handed alpha
Helix 130	130	E	423	428	Right-handed alpha
Helix 131	131	E	428	441	Right-handed alpha
Helix 132	132	F	13	22	Right-handed alpha
Helix 133	133	F	36	44	Right-handed alpha
Helix 134	134	F	59	63	Right-handed 310
Helix 135	135	F	77	83	Right-handed alpha
Helix 136	136	F	101	113	Right-handed alpha
Helix 137	137	F	131	144	Right-handed alpha
Helix 138	138	F	210	216	Right-handed alpha
Helix 139	139	F	227	230	Right-handed 310
Helix 140	140	F	231	251	Right-handed alpha

There are 14 sheets in PDB entry 1E6V. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, BC, CA, CB, A, DB, EA, EB, EC, FA, FB,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	76	first strand
Strand 2	A	83	85	anti-parallel

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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	165	170	first strand
Strand 2	A	207	212	anti-parallel
Strand 3	A	107	111	anti-parallel
Strand 4	A	263	265	anti-parallel

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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	12	first strand
Strand 2	B	18	24	anti-parallel

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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	107	first strand
Strand 2	B	112	116	anti-parallel
Strand 3	B	46	50	anti-parallel
Strand 4	B	176	177	anti-parallel

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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	283	288	first strand
Strand 2	B	293	297	anti-parallel

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There are 4 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	117	120	first strand
Strand 2	C	125	130	anti-parallel
Strand 3	C	86	93	anti-parallel
Strand 4	C	152	154	anti-parallel

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There are 3 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	179	182	first strand
Strand 2	C	187	192	anti-parallel
Strand 3	C	198	204	anti-parallel

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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	74	76	first strand
Strand 2	D	83	85	anti-parallel

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There are 4 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	165	170	first strand
Strand 2	D	207	212	anti-parallel
Strand 3	D	107	111	anti-parallel
Strand 4	D	263	265	anti-parallel

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There are 2 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	8	12	first strand
Strand 2	E	18	24	anti-parallel

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There are 4 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	103	107	first strand
Strand 2	E	112	116	anti-parallel
Strand 3	E	46	50	anti-parallel
Strand 4	E	176	177	anti-parallel

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There are 2 strands in EC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	283	288	first strand
Strand 2	E	293	297	anti-parallel

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There are 4 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	117	120	first strand
Strand 2	F	125	130	anti-parallel
Strand 3	F	86	93	anti-parallel
Strand 4	F	152	154	anti-parallel

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There are 3 strands in FB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	179	182	first strand
Strand 2	F	187	192	anti-parallel
Strand 3	F	198	204	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1E6V

Analysis of interatomic Contacts of Structural Units in PDB entry:
1E6V