Analysis of interatomic Contacts of Structural Units in PDB entry:
1E9V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1E9V entry

There are 2 chains in PDB entry 1E9V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 405
A
 ASP 407LYS 553
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 1E9V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 12Right-handed 310
Helix 2
2
A
25 50Right-handed alpha
Helix 3
3
A
59 69Right-handed alpha
Helix 4
4
A
77 106Right-handed alpha
Helix 5
5
A
116 118Right-handed 310
Helix 6
6
A
124 133Right-handed 310
Helix 7
7
A
136 138Right-handed 310
Helix 8
8
A
142 167Right-handed alpha
Helix 9
9
A
173 187Right-handed alpha
Helix 10
10
A
192 221Right-handed alpha
Helix 11
11
A
246 256Right-handed alpha
Helix 12
12
A
267 274Right-handed 310
Helix 13
13
A
276 279Right-handed alpha
Helix 14
14
A
292 302Right-handed 310
Helix 15
15
A
323 325Right-handed 310
Helix 16
16
A
352 360Right-handed alpha
Helix 17
17
A
378 394Right-handed alpha
Helix 18
18
A
411 422Right-handed 310
Helix 19
19
A
434 438Right-handed 310
Helix 20
20
A
459 475Right-handed 310
Helix 21
21
A
481 483Right-handed 310
Helix 22
22
A
495 506Right-handed alpha
Helix 23
23
A
524 534Right-handed alpha
Helix 24
24
A
542 550Right-handed alpha
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There are 4 sheets in PDB entry 1E9V. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 230first strand
Strand 2
A
371 374anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
338 340first strand
Strand 2
A
326 329parallel
Strand 3
A
306 308parallel
Strand 4
A
238 242parallel
Strand 5
A
262 265parallel
Strand 6
A
284 287parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
486 488first strand
Strand 2
A
399 402parallel
Strand 3
A
427 431parallel
Strand 4
A
453 455parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
489 491first strand
Strand 2
A
513 515parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il