Analysis of interatomic Contacts of Structural Units in PDB entry:
1EBD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1EBD entry

There are 3 chains in PDB entry 1EBD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 7LEU 461
B
 ALA 7LEU 461
C
 ILE 130GLY 170
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 1EBD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 30Right-handed alpha
Helix 2
2
A
45 49Right-handed alpha
Helix 3
3
A
52 69Right-handed alpha
Helix 4
4
A
72 74Right-handed 310
Helix 5
5
A
85 110Right-handed alpha
Helix 6
6
A
166 170Right-handed alpha
Helix 7
7
A
186 197Right-handed alpha
Helix 8
8
A
217 229Right-handed alpha
Helix 9
9
A
313 315Right-handed 310
Helix 10
10
A
322 336Right-handed alpha
Helix 11
11
A
365 369Right-handed alpha
Helix 12
12
A
382 384Right-handed 310
Helix 13
13
A
386 391Right-handed alpha
Helix 14
14
A
419 432Right-handed alpha
Helix 15
15
A
436 441Right-handed alpha
Helix 16
16
A
450 459Right-handed 310
Helix 17
17
B
19 30Right-handed alpha
Helix 18
18
B
45 50Right-handed alpha
Helix 19
19
B
52 70Right-handed alpha
Helix 20
20
B
72 74Right-handed 310
Helix 21
21
B
85 109Right-handed alpha
Helix 22
22
B
166 170Right-handed alpha
Helix 23
23
B
186 198Right-handed alpha
Helix 24
24
B
217 230Right-handed alpha
Helix 25
25
B
283 286Right-handed alpha
Helix 26
26
B
313 315Right-handed 310
Helix 27
27
B
322 337Right-handed alpha
Helix 28
28
B
365 371Right-handed alpha
Helix 29
29
B
386 391Right-handed alpha
Helix 30
30
B
419 432Right-handed alpha
Helix 31
31
B
436 440Right-handed alpha
Helix 32
32
B
450 460Right-handed 310
Helix 33
33
C
133 141Right-handed alpha
Helix 34
34
C
146 148Right-handed 310
Helix 35
35
C
160 168Right-handed alpha
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There are 12 sheets in PDB entry 1EBD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 10first strand
Strand 2
A
134 140parallel
Strand 3
A
126 131anti-parallel
Strand 4
A
118 123anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
309 311first strand
Strand 2
A
142 145parallel
Strand 3
A
12 15parallel
Strand 4
A
35 39parallel
Strand 5
A
113 116parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 151first strand
Strand 2
A
274 276anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
267 270first strand
Strand 2
A
178 182parallel
Strand 3
A
201 206parallel
Strand 4
A
233 236parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 265first strand
Strand 2
A
249 256anti-parallel
Strand 3
A
238 246anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
350 352first strand
Strand 2
A
358 362anti-parallel
Strand 3
A
408 415anti-parallel
Strand 4
A
397 403anti-parallel
Strand 5
A
375 381anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
309 311first strand
Strand 2
B
142 145parallel
Strand 3
B
12 15parallel
Strand 4
B
35 39parallel
Strand 5
B
113 116parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 139first strand
Strand 2
B
126 131anti-parallel
Strand 3
B
118 123anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
149 151first strand
Strand 2
B
274 276anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
267 270first strand
Strand 2
B
178 182parallel
Strand 3
B
201 205parallel
Strand 4
B
233 235parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
259 265first strand
Strand 2
B
250 256anti-parallel
Strand 3
B
238 245anti-parallel
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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
350 352first strand
Strand 2
B
358 362anti-parallel
Strand 3
B
408 415anti-parallel
Strand 4
B
397 403anti-parallel
Strand 5
B
375 381anti-parallel
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