Analysis of interatomic Contacts of Structural Units in PDB entry:
1EBF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1EBF entry

There are 2 chains in PDB entry 1EBF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2LEU 359
B
 SER 2LEU 359
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 1EBF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 27Right-handed alpha
Helix 2
2
A
58 65Right-handed alpha
Helix 3
3
A
72 81Right-handed alpha
Helix 4
4
A
95 100Right-handed alpha
Helix 5
5
A
101 108Right-handed alpha
Helix 6
6
A
117 121Right-handed 310
Helix 7
7
A
123 131Right-handed alpha
Helix 8
8
A
142 146Right-handed 310
Helix 9
9
A
152 163Right-handed alpha
Helix 10
10
A
174 185Right-handed alpha
Helix 11
11
A
193 205Right-handed alpha
Helix 12
12
A
211 216Right-handed alpha
Helix 13
13
A
217 231Right-handed alpha
Helix 14
14
A
248 252Right-handed 310
Helix 15
15
A
257 265Right-handed alpha
Helix 16
16
A
267 279Right-handed alpha
Helix 17
17
A
309 314Right-handed 310
Helix 18
18
A
340 359Right-handed alpha
Helix 19
19
B
14 27Right-handed alpha
Helix 20
20
B
58 66Right-handed alpha
Helix 21
21
B
72 82Right-handed alpha
Helix 22
22
B
95 100Right-handed alpha
Helix 23
23
B
101 108Right-handed alpha
Helix 24
24
B
118 122Right-handed 310
Helix 25
25
B
123 129Right-handed alpha
Helix 26
26
B
142 146Right-handed 310
Helix 27
27
B
152 163Right-handed alpha
Helix 28
28
B
174 185Right-handed alpha
Helix 29
29
B
193 204Right-handed alpha
Helix 30
30
B
211 216Right-handed alpha
Helix 31
31
B
217 231Right-handed alpha
Helix 32
32
B
257 265Right-handed alpha
Helix 33
33
B
267 281Right-handed alpha
Helix 34
34
B
309 313Right-handed 310
Helix 35
35
B
340 359Right-handed alpha
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There are 3 sheets in PDB entry 1EBF. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 46first strand
Strand 2
A
32 39anti-parallel
Strand 3
A
5 11parallel
Strand 4
A
87 91parallel
Strand 5
A
111 113parallel
Strand 6
A
140 141parallel
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There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
297 306first strand
Strand 2
A
283 292anti-parallel
Strand 3
A
166 172anti-parallel
Strand 4
A
319 325anti-parallel
Strand 5
A
332 336anti-parallel
Strand 6
B
332 337anti-parallel
Strand 7
B
318 325anti-parallel
Strand 8
B
166 172anti-parallel
Strand 9
B
283 292anti-parallel
Strand 10
B
297 306anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 46first strand
Strand 2
B
32 40anti-parallel
Strand 3
B
5 11parallel
Strand 4
B
87 91parallel
Strand 5
B
111 113parallel
Strand 6
B
140 141parallel
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