Analysis of interatomic Contacts of Structural Units in PDB entry:
1EBH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1EBH entry

There are 2 chains in PDB entry 1EBH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1LEU 436
B
 ALA 1LEU 436
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 1EBH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
IA
A
62 79Right-handed alpha
Helix 2
JA
A
86 97Right-handed alpha
Helix 3
KA
A
107 124Right-handed alpha
Helix 4
LA
A
129 136Right-handed alpha
Helix 5
AA
A
179 200Right-handed alpha
Helix 6
A1A
A
203 206Right-handed 310
Helix 7
BA
A
221 234Right-handed alpha
Helix 8
B1A
A
249 251Right-handed 310
Helix 9
CA
A
275 288Right-handed alpha
Helix 10
A
A
303 311Right-handed alpha
Helix 11
D1A
A
320 323Right-handed 310
Helix 12
EA
A
327 335Right-handed alpha
Helix 13
E1A
A
346 349Right-handed 310
Helix 14
FA
A
352 364Right-handed alpha
Helix 15
GA
A
382 390Right-handed alpha
Helix 16
HA
A
403 419Right-handed alpha
Helix 17
IB
B
62 79Right-handed alpha
Helix 18
JB
B
86 97Right-handed alpha
Helix 19
KB
B
107 124Right-handed alpha
Helix 20
LB
B
129 136Right-handed alpha
Helix 21
AB
B
179 200Right-handed alpha
Helix 22
A1B
B
203 206Right-handed 310
Helix 23
BB
B
221 234Right-handed alpha
Helix 24
B1B
B
249 251Right-handed 310
Helix 25
CB
B
275 288Right-handed alpha
Helix 26
DB
B
303 311Right-handed alpha
Helix 27
D1B
B
320 323Right-handed 310
Helix 28
EB
B
327 335Right-handed alpha
Helix 29
E1B
B
346 349Right-handed 310
Helix 30
FB
B
352 364Right-handed alpha
Helix 31
GB
B
382 390Right-handed alpha
Helix 32
HB
B
403 419Right-handed alpha
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There are 6 sheets in PDB entry 1EBH. Click on sheet of interest to get list of strands forming it: MEA, BAA, S1A, MEB, BAB, S1B,

There are 3 strands in MEA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 12first strand
Strand 2
A
16 25anti-parallel
Strand 3
A
29 34anti-parallel
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There are 9 strands in BAA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 155first strand
Strand 2
A
168 173anti-parallel
Strand 3
A
241 246anti-parallel
Strand 4
A
293 295parallel
Strand 5
A
316 319parallel
Strand 6
A
340 345parallel
Strand 7
A
368 373parallel
Strand 8
A
394 396parallel
Strand 9
A
144 155parallel
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There are 2 strands in S1A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 155first strand
Strand 2
A
422 425parallel
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There are 3 strands in MEB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 12first strand
Strand 2
B
16 25anti-parallel
Strand 3
B
29 34anti-parallel
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There are 9 strands in BAB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
144 155first strand
Strand 2
B
168 173anti-parallel
Strand 3
B
241 246anti-parallel
Strand 4
B
293 295parallel
Strand 5
B
316 319parallel
Strand 6
B
340 345parallel
Strand 7
B
368 373parallel
Strand 8
B
394 396parallel
Strand 9
B
144 155parallel
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There are 2 strands in S1B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
144 155first strand
Strand 2
B
422 425parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il