Analysis of interatomic Contacts of Structural Units in PDB entry:
1EBV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1EBV entry

There are 2 chains in PDB entry 1EBV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 33PHE 529
A
 LEU 531PRO 583
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 1EBV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
34 39Right-handed 310
Helix 2
2
A
73 82Right-handed alpha
Helix 3
3
A
85 94Right-handed alpha
Helix 4
4
A
96 105Right-handed alpha
Helix 5
5
A
107 122Right-handed alpha
Helix 6
6
A
138 144Right-handed alpha
Helix 7
7
A
173 182Right-handed alpha
Helix 8
8
A
195 207Right-handed alpha
Helix 9
9
A
230 235Right-handed alpha
Helix 10
10
A
237 245Right-handed alpha
Helix 11
11
A
280 284Right-handed 310
Helix 12
12
A
289 294Right-handed 310
Helix 13
13
A
295 320Right-handed alpha
Helix 14
14
A
324 347Right-handed alpha
Helix 15
15
A
347 354Right-handed alpha
Helix 16
16
A
362 367Right-handed 310
Helix 17
17
A
378 385Right-handed alpha
Helix 18
18
A
386 386Right-handed 310
Helix 19
19
A
387 391Right-handed 310
Helix 20
20
A
403 408Right-handed alpha
Helix 21
21
A
412 418Right-handed alpha
Helix 22
22
A
418 429Right-handed alpha
Helix 23
23
A
441 443Right-handed 310
Helix 24
24
A
444 458Right-handed alpha
Helix 25
25
A
462 470Right-handed alpha
Helix 26
26
A
477 482Right-handed alpha
Helix 27
27
A
485 496Right-handed alpha
Helix 28
28
A
497 501Right-handed 310
Helix 29
29
A
502 510Right-handed alpha
Helix 30
30
A
519 527Right-handed alpha
Helix 31
31
A
531 536Right-handed alpha
Helix 32
32
A
537 541Right-handed 310
Helix 33
33
A
547 551Right-handed 310
Helix 34
34
A
552 561Right-handed alpha
Helix 35
35
A
563 570Right-handed alpha
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There are 5 sheets in PDB entry 1EBV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 50first strand
Strand 2
A
54 58anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 65first strand
Strand 2
A
71 72anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 131first strand
Strand 2
A
149 150anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
255 257first strand
Strand 2
A
260 262anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
395 397first strand
Strand 2
A
400 402anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il