Analysis of interatomic Contacts of Structural Units in PDB entry:
1EDG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1EDG entry

There is 1 chain in PDB entry 1EDG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 1ASN 380
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 1EDG. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
4 6Right-handed 310
Helix 2
2
A
21 29Right-handed alpha
Helix 3
3
A
50 56Right-handed 310
Helix 4
4
A
64 73Right-handed alpha
Helix 5
5
A
85 87Right-handed 310
Helix 6
6
A
97 113Right-handed alpha
Helix 7
7
A
135 155Right-handed 310
Helix 8
8
A
187 210Right-handed alpha
Helix 9
9
A
212 215Right-handed 310
Helix 10
10
A
224 226Right-handed 310
Helix 11
11
A
228 232Right-handed alpha
Helix 12
12
A
259 262Right-handed alpha
Helix 13
13
A
266 268Right-handed 310
Helix 14
14
A
279 295Right-handed alpha
Helix 15
15
A
297 299Right-handed 310
Helix 16
16
A
316 333Right-handed alpha
Helix 17
17
A
365 374Right-handed alpha
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There are 2 sheets in PDB entry 1EDG. Click on sheet of interest to get list of strands forming it: A, B,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
32 34first strand
Strand 2
A
77 80parallel
Strand 3
A
116 120parallel
Strand 4
A
163 166parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
219 222first strand
Strand 2
A
249 254parallel
Strand 3
A
303 307parallel
Strand 4
A
336 339parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il