Analysis of interatomic Contacts of Structural Units in PDB entry:
1EDT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1EDT entry

There is 1 chain in PDB entry 1EDT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 6THR 270
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 1EDT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
A
A
22 26Right-handed alpha
Helix 2
B1
A
63 70Right-handed alpha
Helix 3
B2
A
72 81Right-handed alpha
Helix 4
C
A
105 122Right-handed alpha
Helix 5
D
A
148 159Right-handed alpha
Helix 6
E
A
171 174Right-handed alpha
Helix 7
G
A
223 235Right-handed alpha
Helix 8
H
A
252 263Right-handed alpha
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There are 3 sheets in PDB entry 1EDT. Click on sheet of interest to get list of strands forming it: BBL, S1, S2,

There are 9 strands in BBL sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 16first strand
Strand 2
A
40 43parallel
Strand 3
A
85 92parallel
Strand 4
A
126 130parallel
Strand 5
A
164 169parallel
Strand 6
A
190 193parallel
Strand 7
A
211 217parallel
Strand 8
A
240 244parallel
Strand 9
A
10 16parallel
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There are 2 strands in S1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 50first strand
Strand 2
A
56 60anti-parallel
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There are 2 strands in S2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 30first strand
Strand 2
A
267 269anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il