Analysis of interatomic Contacts of Structural Units in PDB entry:
1EE8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1EE8 entry

There are 2 chains in PDB entry 1EE8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 1PRO 266
B
 PRO 1PRO 266
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 1EE8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 18Right-handed alpha
Helix 2
2
A
35 40Right-handed 310
Helix 3
3
A
116 121Right-handed alpha
Helix 4
4
A
131 141Right-handed alpha
Helix 5
5
A
145 153Right-handed alpha
Helix 6
6
A
160 171Right-handed alpha
Helix 7
7
A
179 182Right-handed 310
Helix 8
8
A
183 204Right-handed alpha
Helix 9
9
A
224 228Right-handed 310
Helix 10
10
B
2 18Right-handed alpha
Helix 11
11
B
35 40Right-handed 310
Helix 12
12
B
115 120Right-handed alpha
Helix 13
13
B
131 141Right-handed alpha
Helix 14
14
B
145 152Right-handed alpha
Helix 15
15
B
160 171Right-handed alpha
Helix 16
16
B
179 182Right-handed 310
Helix 17
17
B
183 204Right-handed alpha
Helix 18
18
B
223 228Right-handed 310
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There are 4 sheets in PDB entry 1EE8. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 34first strand
Strand 2
A
103 108parallel
Strand 3
A
62 67anti-parallel
Strand 4
A
53 58anti-parallel
Strand 5
A
42 50anti-parallel
Strand 6
A
21 26anti-parallel
Strand 7
A
82 88anti-parallel
Strand 8
A
92 96anti-parallel
Strand 9
A
73 75anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 249first strand
Strand 2
A
254 257anti-parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 34first strand
Strand 2
B
103 108parallel
Strand 3
B
62 67anti-parallel
Strand 4
B
53 58anti-parallel
Strand 5
B
42 50anti-parallel
Strand 6
B
21 27anti-parallel
Strand 7
B
82 88anti-parallel
Strand 8
B
92 96anti-parallel
Strand 9
B
73 75anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
246 250first strand
Strand 2
B
253 257anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il