Analysis of interatomic Contacts of Structural Units in PDB entry:
1EEP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1EEP entry

There are 2 chains in PDB entry 1EEP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 3SER 390
B
 ASN 3HIS 389
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 1EEP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 13Right-handed 310
Helix 2
2
A
25 29Right-handed 310
Helix 3
3
A
55 66Right-handed alpha
Helix 4
4
A
76 89Right-handed alpha
Helix 5
5
A
153 164Right-handed alpha
Helix 6
6
A
178 192Right-handed alpha
Helix 7
7
A
204 213Right-handed alpha
Helix 8
8
A
229 236Right-handed alpha
Helix 9
9
A
240 253Right-handed alpha
Helix 10
10
A
267 278Right-handed alpha
Helix 11
11
A
285 290Right-handed alpha
Helix 12
12
A
351 371Right-handed alpha
Helix 13
13
A
374 381Right-handed alpha
Helix 14
14
B
25 29Right-handed 310
Helix 15
15
B
55 66Right-handed alpha
Helix 16
16
B
76 89Right-handed alpha
Helix 17
17
B
153 164Right-handed alpha
Helix 18
18
B
178 192Right-handed alpha
Helix 19
19
B
204 214Right-handed alpha
Helix 20
20
B
229 235Right-handed alpha
Helix 21
21
B
240 252Right-handed alpha
Helix 22
22
B
267 277Right-handed alpha
Helix 23
23
B
351 371Right-handed alpha
Helix 24
24
B
374 381Right-handed alpha
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There are 8 sheets in PDB entry 1EEP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 17first strand
Strand 2
A
384 386anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 34first strand
Strand 2
A
40 41anti-parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 47first strand
Strand 2
A
68 71parallel
Strand 3
A
145 148parallel
Strand 4
A
168 171parallel
Strand 5
A
196 202parallel
Strand 6
A
218 221parallel
Strand 7
A
258 262parallel
Strand 8
A
281 284parallel
Strand 9
A
45 47parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
298 301first strand
Strand 2
A
304 307anti-parallel
Strand 3
A
346 347anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 17first strand
Strand 2
B
384 386anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 36first strand
Strand 2
B
39 41anti-parallel
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There are 9 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 47first strand
Strand 2
B
68 71parallel
Strand 3
B
145 148parallel
Strand 4
B
168 171parallel
Strand 5
B
196 202parallel
Strand 6
B
218 221parallel
Strand 7
B
258 262parallel
Strand 8
B
281 284parallel
Strand 9
B
45 47parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
298 300first strand
Strand 2
B
305 307anti-parallel
Strand 3
B
346 347anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il