Analysis of interatomic Contacts of Structural Units in PDB entry:
1EF0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1EF0 entry

There are 2 chains in PDB entry 1EF0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 699CYS 455
B
 LYS 697ARG 458
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 1EF0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 21Right-handed 310
Helix 2
2
A
139 150Right-handed alpha
Helix 3
3
A
162 167Right-handed 310
Helix 4
4
A
168 175Right-handed alpha
Helix 5
5
A
187 196Right-handed alpha
Helix 6
6
A
203 219Right-handed alpha
Helix 7
7
A
232 246Right-handed alpha
Helix 8
8
A
284 293Right-handed alpha
Helix 9
9
A
304 310Right-handed 310
Helix 10
10
A
311 326Right-handed alpha
Helix 11
11
A
343 357Right-handed alpha
Helix 12
12
A
388 396Right-handed alpha
Helix 13
13
B
19 21Right-handed 310
Helix 14
14
B
133 135Right-handed 310
Helix 15
15
B
136 147Right-handed alpha
Helix 16
16
B
162 167Right-handed 310
Helix 17
17
B
168 175Right-handed alpha
Helix 18
18
B
187 193Right-handed alpha
Helix 19
19
B
206 219Right-handed alpha
Helix 20
20
B
232 245Right-handed alpha
Helix 21
21
B
305 309Right-handed 310
Helix 22
22
B
311 327Right-handed alpha
Helix 23
23
B
343 357Right-handed alpha
Helix 24
24
B
388 396Right-handed alpha
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There are 17 sheets in PDB entry 1EF0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 9first strand
Strand 2
A
15 17anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 28first strand
Strand 2
A
34 39anti-parallel
Strand 3
A
435 436anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 76first strand
Strand 2
A
42 52anti-parallel
Strand 3
A
421 432anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 160first strand
Strand 2
A
80 86anti-parallel
Strand 3
A
176 179anti-parallel
Strand 4
A
417 419anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 113first strand
Strand 2
A
119 127anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
225 229first strand
Strand 2
A
261 265anti-parallel
Strand 3
A
251 253anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
296 297first strand
Strand 2
A
300 301anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
327 330first strand
Strand 2
A
336 341anti-parallel
Strand 3
A
379 386anti-parallel
Strand 4
A
360 367anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
443 445first strand
Strand 2
A
451 453anti-parallel
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There are 8 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
456 457first strand
Strand 2
B
421 437parallel
Strand 3
B
42 52anti-parallel
Strand 4
B
72 76anti-parallel
Strand 5
B
700 2anti-parallel
Strand 6
B
421 437anti-parallel
Strand 7
B
34 39anti-parallel
Strand 8
B
26 28anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 9first strand
Strand 2
B
15 17anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
154 160first strand
Strand 2
B
80 86anti-parallel
Strand 3
B
176 179anti-parallel
Strand 4
B
417 419anti-parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
89 93first strand
Strand 2
B
101 113anti-parallel
Strand 3
B
119 131anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
225 226first strand
Strand 2
B
264 265anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
296 297first strand
Strand 2
B
300 301anti-parallel
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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
328 330first strand
Strand 2
B
336 341anti-parallel
Strand 3
B
381 386anti-parallel
Strand 4
B
360 364anti-parallel
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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
443 445first strand
Strand 2
B
451 453anti-parallel
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