Analysis of interatomic Contacts of Structural Units in PDB entry:
1EFJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1EFJ entry

There are 2 chains in PDB entry 1EFJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 243LEU 263
B
 LYS 393PRO 576
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 10 helices in PDB entry 1EFJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
253 262Right-handed alpha
Helix 2
3
B
395 420Right-handed alpha
Helix 3
4
B
427 438Right-handed alpha
Helix 4
5
B
439 450Right-handed alpha
Helix 5
6
B
468 474Right-handed alpha
Helix 6
7
B
479 492Right-handed alpha
Helix 7
8
B
496 509Right-handed alpha
Helix 8
9
B
518 541Right-handed 310
Helix 9
10
B
546 564Right-handed alpha
Helix 10
11
B
565 572Right-handed alpha
Back to top of page

There is 1 sheet ( A) in PDB entry 1EFJ.

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
451 452first strand
Strand 2
B
457 460anti-parallel
Strand 3
B
464 467anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il