Analysis of interatomic Contacts of Structural Units in PDB entry:
1EGD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1EGD entry

There are 4 chains in PDB entry 1EGD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 10ASN 396
B
 LEU 10ASN 396
C
 LEU 10ASN 396
D
 LEU 10ASN 396
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 67 helices in PDB entry 1EGD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 34Right-handed alpha
Helix 2
2
A
36 45Right-handed alpha
Helix 3
3
A
50 59Right-handed alpha
Helix 4
4
A
68 70Right-handed 310
Helix 5
5
A
77 90Right-handed alpha
Helix 6
6
A
92 104Right-handed alpha
Helix 7
7
A
106 111Right-handed alpha
Helix 8
8
A
114 126Right-handed alpha
Helix 9
9
A
144 146Right-handed 310
Helix 10
10
A
190 192Right-handed 310
Helix 11
11
A
234 236Right-handed 310
Helix 12
12
A
244 279Right-handed alpha
Helix 13
13
A
288 290Right-handed 310
Helix 14
14
A
292 321Right-handed alpha
Helix 15
15
A
326 355Right-handed alpha
Helix 16
16
A
362 373Right-handed alpha
Helix 17
17
A
379 394Right-handed alpha
Helix 18
18
B
18 33Right-handed alpha
Helix 19
19
B
36 45Right-handed alpha
Helix 20
20
B
50 59Right-handed alpha
Helix 21
21
B
68 70Right-handed 310
Helix 22
22
B
77 90Right-handed alpha
Helix 23
23
B
92 111Right-handed alpha
Helix 24
24
B
114 120Right-handed alpha
Helix 25
25
B
122 126Right-handed alpha
Helix 26
26
B
144 146Right-handed 310
Helix 27
27
B
190 193Right-handed alpha
Helix 28
28
B
234 236Right-handed 310
Helix 29
29
B
244 278Right-handed alpha
Helix 30
30
B
288 290Right-handed 310
Helix 31
31
B
292 321Right-handed alpha
Helix 32
32
B
326 350Right-handed alpha
Helix 33
33
B
352 356Right-handed alpha
Helix 34
34
B
362 373Right-handed alpha
Helix 35
35
B
379 393Right-handed alpha
Helix 36
36
C
18 33Right-handed alpha
Helix 37
37
C
35 45Right-handed alpha
Helix 38
38
C
50 59Right-handed alpha
Helix 39
39
C
68 70Right-handed 310
Helix 40
40
C
77 90Right-handed alpha
Helix 41
41
C
92 111Right-handed alpha
Helix 42
42
C
114 120Right-handed alpha
Helix 43
43
C
144 146Right-handed 310
Helix 44
44
C
170 172Right-handed 310
Helix 45
45
C
190 193Right-handed alpha
Helix 46
46
C
234 236Right-handed 310
Helix 47
47
C
244 278Right-handed alpha
Helix 48
48
C
288 290Right-handed 310
Helix 49
49
C
292 320Right-handed alpha
Helix 50
50
C
326 355Right-handed alpha
Helix 51
51
C
361 373Right-handed alpha
Helix 52
52
C
379 394Right-handed alpha
Helix 53
53
D
18 34Right-handed alpha
Helix 54
54
D
36 45Right-handed alpha
Helix 55
55
D
50 59Right-handed alpha
Helix 56
56
D
68 70Right-handed 310
Helix 57
57
D
77 111Right-handed alpha
Helix 58
58
D
114 126Right-handed alpha
Helix 59
59
D
144 146Right-handed 310
Helix 60
60
D
190 192Right-handed 310
Helix 61
61
D
234 236Right-handed 310
Helix 62
62
D
244 278Right-handed alpha
Helix 63
63
D
288 290Right-handed 310
Helix 64
64
D
292 320Right-handed alpha
Helix 65
65
D
326 356Right-handed alpha
Helix 66
66
D
361 373Right-handed 310
Helix 67
67
D
379 394Right-handed alpha
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There are 10 sheets in PDB entry 1EGD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 134first strand
Strand 2
A
175 181parallel
Strand 3
A
194 200anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 153first strand
Strand 2
A
157 164anti-parallel
Strand 3
A
225 233anti-parallel
Strand 4
A
206 208anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
131 134first strand
Strand 2
B
175 181parallel
Strand 3
B
194 200anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
150 153first strand
Strand 2
B
157 161anti-parallel
Strand 3
B
230 233anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
162 164first strand
Strand 2
B
225 227anti-parallel
Strand 3
B
206 208anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
131 134first strand
Strand 2
C
175 181parallel
Strand 3
C
194 200anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
150 154first strand
Strand 2
C
157 164anti-parallel
Strand 3
C
225 233anti-parallel
Strand 4
C
206 208anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
150 153first strand
Strand 2
D
157 161anti-parallel
Strand 3
D
230 233anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
162 164first strand
Strand 2
D
225 227anti-parallel
Strand 3
D
206 208anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
194 200first strand
Strand 2
D
173 181anti-parallel
Strand 3
D
130 134parallel
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