Analysis of interatomic Contacts of Structural Units in PDB entry:
1EMD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1EMD entry

There is 1 chain in PDB entry 1EMD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 312
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 1EMD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
B
A
10 23Right-handed alpha
Helix 2
C
A
36 49Right-handed alpha
Helix 3
C'
A
63 68Right-handed alpha
Helix 4
DE
A
86 108Right-handed alpha
Helix 5
1F
A
119 132Right-handed alpha
Helix 6
2F
A
145 160Right-handed alpha
Helix 7
1G2
A
192 213Right-handed alpha
Helix 8
3G
A
221 240Right-handed alpha
Helix 9
H
A
285 312Right-handed alpha
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There are 3 sheets in PDB entry 1EMD. Click on sheet of interest to get list of strands forming it: S1, S2, S3,

There are 6 strands in S1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1 7first strand
Strand 2
A
27 34parallel
Strand 3
A
53 59parallel
Strand 4
A
71 74anti-parallel
Strand 5
A
113 116anti-parallel
Strand 6
A
141 145anti-parallel
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There are 2 strands in S2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 174first strand
Strand 2
A
179 185anti-parallel
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There are 3 strands in S3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
245 253first strand
Strand 2
A
261 267anti-parallel
Strand 3
A
270 274anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il