Analysis of interatomic Contacts of Structural Units in PDB entry:
1EP5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1EP5 entry

There are 3 chains in PDB entry 1EP5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 VAL 119TRP 275
A
 MET 120TRP 275
C
 SER 124TRP 275
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 7 helices in PDB entry 1EP5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
159 165Right-handed alpha
Helix 2
2
A
159 164Right-handed alpha
Helix 3
3
A
171 173Right-handed 310
Helix 4
4
A
181 186Right-handed alpha
Helix 5
5
C
161 165Right-handed 310
Helix 6
6
C
171 173Right-handed 310
Helix 7
7
C
181 186Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 1EP5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
156 157first strand
Strand 2
B
127 132anti-parallel
Strand 3
B
135 143anti-parallel
Strand 4
B
146 150anti-parallel
Strand 5
B
175 179anti-parallel
Strand 6
B
168 170anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
273 274first strand
Strand 2
B
237 247anti-parallel
Strand 3
B
229 231anti-parallel
Strand 4
B
198 202anti-parallel
Strand 5
B
205 210anti-parallel
Strand 6
B
213 217anti-parallel
Strand 7
B
250 258anti-parallel
Strand 8
B
264 267anti-parallel
Strand 9
B
250 258anti-parallel
Strand 10
B
237 247anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 157first strand
Strand 2
A
127 132anti-parallel
Strand 3
A
135 143anti-parallel
Strand 4
A
146 150anti-parallel
Strand 5
A
175 179anti-parallel
Strand 6
A
168 170anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 246first strand
Strand 2
A
229 231anti-parallel
Strand 3
A
198 202anti-parallel
Strand 4
A
205 210anti-parallel
Strand 5
A
213 217anti-parallel
Strand 6
A
250 258anti-parallel
Strand 7
A
264 267anti-parallel
Strand 8
A
250 258anti-parallel
Strand 9
A
237 246anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
156 157first strand
Strand 2
C
127 132anti-parallel
Strand 3
C
135 143anti-parallel
Strand 4
C
146 150anti-parallel
Strand 5
C
175 179anti-parallel
Strand 6
C
168 170anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
273 274first strand
Strand 2
C
237 247anti-parallel
Strand 3
C
229 231anti-parallel
Strand 4
C
198 202anti-parallel
Strand 5
C
205 210anti-parallel
Strand 6
C
213 217anti-parallel
Strand 7
C
250 258anti-parallel
Strand 8
C
264 267anti-parallel
Strand 9
C
250 258anti-parallel
Strand 10
C
237 247anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il