Analysis of interatomic Contacts of Structural Units in PDB entry:
1ERE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1ERE entry

There are 6 chains in PDB entry 1ERE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 305ARG 548
B
 SER 305ARG 548
C
 SER 305ARG 548
D
 SER 305ARG 548
E
 SER 305ARG 548
F
 SER 305ARG 548
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 69 helices in PDB entry 1ERE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
312 322Right-handed alpha
Helix 2
2
A
339 363Right-handed alpha
Helix 3
15
A
367 369Right-handed 310
Helix 4
4
A
372 394Right-handed alpha
Helix 5
5
A
412 417Right-handed 310
Helix 6
6
A
421 437Right-handed alpha
Helix 7
7
A
442 455Right-handed alpha
Helix 8
8
A
458 460Right-handed 310
Helix 9
9
A
466 492Right-handed alpha
Helix 10
10
A
497 530Right-handed alpha
Helix 11
11
A
538 546Right-handed alpha
Helix 12
12
B
306 309Right-handed alpha
Helix 13
13
B
312 322Right-handed alpha
Helix 14
14
B
339 363Right-handed alpha
Helix 15
16
B
372 395Right-handed alpha
Helix 16
17
B
412 417Right-handed 310
Helix 17
18
B
421 437Right-handed alpha
Helix 18
19
B
442 455Right-handed alpha
Helix 19
20
B
458 460Right-handed 310
Helix 20
21
B
466 492Right-handed alpha
Helix 21
22
B
497 530Right-handed alpha
Helix 22
23
B
538 546Right-handed alpha
Helix 23
24
C
306 309Right-handed alpha
Helix 24
25
C
312 322Right-handed alpha
Helix 25
26
C
339 363Right-handed alpha
Helix 26
27
C
367 369Right-handed 310
Helix 27
28
C
372 394Right-handed alpha
Helix 28
29
C
412 417Right-handed alpha
Helix 29
30
C
421 438Right-handed alpha
Helix 30
31
C
442 455Right-handed alpha
Helix 31
32
C
458 460Right-handed 310
Helix 32
33
C
466 492Right-handed alpha
Helix 33
34
C
497 530Right-handed alpha
Helix 34
35
C
538 546Right-handed alpha
Helix 35
36
D
312 322Right-handed alpha
Helix 36
37
D
339 363Right-handed alpha
Helix 37
38
D
367 369Right-handed 310
Helix 38
39
D
372 394Right-handed alpha
Helix 39
40
D
412 417Right-handed 310
Helix 40
41
D
421 437Right-handed alpha
Helix 41
42
D
442 455Right-handed alpha
Helix 42
43
D
458 460Right-handed 310
Helix 43
44
D
466 492Right-handed alpha
Helix 44
45
D
497 530Right-handed alpha
Helix 45
46
D
538 546Right-handed alpha
Helix 46
47
E
307 309Right-handed 310
Helix 47
48
E
312 322Right-handed alpha
Helix 48
49
E
339 363Right-handed alpha
Helix 49
50
E
367 369Right-handed 310
Helix 50
51
E
372 395Right-handed alpha
Helix 51
52
E
412 417Right-handed alpha
Helix 52
53
E
421 438Right-handed alpha
Helix 53
54
E
442 455Right-handed alpha
Helix 54
55
E
458 460Right-handed 310
Helix 55
56
E
466 492Right-handed alpha
Helix 56
57
E
497 530Right-handed alpha
Helix 57
58
E
538 546Right-handed alpha
Helix 58
59
F
307 309Right-handed 310
Helix 59
60
F
312 322Right-handed alpha
Helix 60
61
F
339 363Right-handed alpha
Helix 61
62
F
367 369Right-handed 310
Helix 62
63
F
372 395Right-handed alpha
Helix 63
64
F
412 417Right-handed alpha
Helix 64
65
F
421 437Right-handed alpha
Helix 65
66
F
442 455Right-handed alpha
Helix 66
67
F
458 460Right-handed 310
Helix 67
68
F
466 492Right-handed alpha
Helix 68
69
F
497 530Right-handed alpha
Helix 69
70
F
538 546Right-handed alpha
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There are 6 sheets in PDB entry 1ERE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
401 405first strand
Strand 2
A
408 411anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
401 405first strand
Strand 2
B
408 411anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
401 405first strand
Strand 2
C
408 411anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
401 405first strand
Strand 2
D
408 411anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
401 405first strand
Strand 2
E
408 411anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
401 405first strand
Strand 2
F
408 411anti-parallel
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