Analysis of interatomic Contacts of Structural Units in PDB entry:
1EUD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1EUD entry

There are 5 chains in PDB entry 1EUD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 1GLY 258
A
 ALA 260LEU 306
B
 MET 0ASN 331
B
 ALA 333ALA 342
B
 ARG 344LYS 394
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 1EUD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 11Right-handed 310
Helix 2
2
A
25 39Right-handed alpha
Helix 3
3
A
63 72Right-handed alpha
Helix 4
4
A
81 95Right-handed alpha
Helix 5
5
A
108 120Right-handed alpha
Helix 6
6
A
147 151Right-handed 310
Helix 7
7
A
163 176Right-handed alpha
Helix 8
8
A
195 206Right-handed alpha
Helix 9
9
A
221 234Right-handed alpha
Helix 10
10
A
270 281Right-handed alpha
Helix 11
11
A
288 290Right-handed 310
Helix 12
12
A
291 303Right-handed alpha
Helix 13
13
B
4 14Right-handed alpha
Helix 14
14
B
27 39Right-handed alpha
Helix 15
15
B
53 57Right-handed 310
Helix 16
16
B
72 82Right-handed alpha
Helix 17
17
B
123 126Right-handed 310
Helix 18
18
B
139 147Right-handed alpha
Helix 19
19
B
148 151Right-handed 310
Helix 20
20
B
163 174Right-handed alpha
Helix 21
21
B
177 198Right-handed alpha
Helix 22
22
B
227 232Right-handed 310
Helix 23
23
B
233 239Right-handed alpha
Helix 24
24
B
246 255Right-handed alpha
Helix 25
25
B
272 286Right-handed alpha
Helix 26
26
B
301 313Right-handed alpha
Helix 27
27
B
333 342Right-handed alpha
Helix 28
28
B
360 370Right-handed alpha
Helix 29
29
B
380 391Right-handed alpha
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There are 8 sheets in PDB entry 1EUD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 55first strand
Strand 2
A
58 61anti-parallel
Strand 3
A
41 46parallel
Strand 4
A
17 21parallel
Strand 5
A
75 78parallel
Strand 6
A
99 102parallel
Strand 7
A
126 128parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 144first strand
Strand 2
A
134 137anti-parallel
Strand 3
A
180 185anti-parallel
Strand 4
A
153 160parallel
Strand 5
A
211 217parallel
Strand 6
A
242 247parallel
Strand 7
A
284 285parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 25first strand
Strand 2
B
103 107anti-parallel
Strand 3
B
43 47anti-parallel
Strand 4
B
67 70anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 59first strand
Strand 2
B
87 89anti-parallel
Strand 3
B
98 99anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
152 155first strand
Strand 2
B
127 133anti-parallel
Strand 3
B
113 122anti-parallel
Strand 4
B
200 211anti-parallel
Strand 5
B
215 218anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
152 155first strand
Strand 2
B
127 133anti-parallel
Strand 3
B
113 122anti-parallel
Strand 4
B
200 211anti-parallel
Strand 5
B
221 225anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
258 261first strand
Strand 2
B
292 295anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
266 270first strand
Strand 2
B
320 326parallel
Strand 3
B
352 357parallel
Strand 4
B
375 377parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il