Analysis of interatomic Contacts of Structural Units in PDB entry:
1EYR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1EYR entry

There are 2 chains in PDB entry 1EYR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1HIS 225
B
 MSE 1LEU 223
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 1EYR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 23Right-handed 310
Helix 2
2
A
31 43Right-handed alpha
Helix 3
3
A
54 64Right-handed alpha
Helix 4
4
A
72 77Right-handed alpha
Helix 5
5
A
81 94Right-handed alpha
Helix 6
6
A
111 120Right-handed alpha
Helix 7
7
A
157 162Right-handed 310
Helix 8
8
A
164 168Right-handed 310
Helix 9
9
A
183 190Right-handed alpha
Helix 10
10
A
212 224Right-handed alpha
Helix 11
11
B
20 23Right-handed 310
Helix 12
12
B
31 43Right-handed alpha
Helix 13
13
B
54 64Right-handed alpha
Helix 14
14
B
72 77Right-handed 310
Helix 15
15
B
81 94Right-handed alpha
Helix 16
16
B
111 120Right-handed alpha
Helix 17
17
B
157 163Right-handed alpha
Helix 18
18
B
164 168Right-handed 310
Helix 19
19
B
183 190Right-handed alpha
Helix 20
20
B
212 223Right-handed alpha
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There are 6 sheets in PDB entry 1EYR. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 201first strand
Strand 2
A
130 135parallel
Strand 3
A
171 182anti-parallel
Strand 4
A
98 102anti-parallel
Strand 5
A
4 10parallel
Strand 6
A
47 52parallel
Strand 7
A
67 70parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 201first strand
Strand 2
A
130 135parallel
Strand 3
A
171 182anti-parallel
Strand 4
B
144 146anti-parallel
Strand 5
B
152 154anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 26first strand
Strand 2
A
29 30anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
198 201first strand
Strand 2
B
130 135parallel
Strand 3
B
171 182anti-parallel
Strand 4
A
144 146anti-parallel
Strand 5
A
152 154anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
198 201first strand
Strand 2
B
130 135parallel
Strand 3
B
171 182anti-parallel
Strand 4
B
98 102anti-parallel
Strand 5
B
4 10parallel
Strand 6
B
47 52parallel
Strand 7
B
67 70parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 26first strand
Strand 2
B
29 30anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il