Analysis of interatomic Contacts of Structural Units in PDB entry:
1F06


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1F06 entry

There are 2 chains in PDB entry 1F06 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 320
B
 MET 501VAL 820
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 1F06. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 23Right-handed alpha
Helix 2
2
A
50 55Right-handed 310
Helix 3
3
A
70 80Right-handed alpha
Helix 4
4
A
91 93Right-handed 310
Helix 5
5
A
94 110Right-handed alpha
Helix 6
6
A
122 135Right-handed alpha
Helix 7
7
A
149 158Right-handed alpha
Helix 8
8
A
172 182Right-handed alpha
Helix 9
9
A
188 192Right-handed alpha
Helix 10
10
A
202 204Right-handed 310
Helix 11
11
A
205 215Right-handed alpha
Helix 12
12
A
231 239Right-handed alpha
Helix 13
13
A
269 291Right-handed alpha
Helix 14
14
A
298 302Right-handed 310
Helix 15
15
A
303 308Right-handed 310
Helix 16
16
A
311 320Right-handed alpha
Helix 17
17
B
512 523Right-handed alpha
Helix 18
18
B
550 555Right-handed 310
Helix 19
19
B
570 580Right-handed alpha
Helix 20
20
B
591 593Right-handed 310
Helix 21
21
B
594 610Right-handed alpha
Helix 22
22
B
622 635Right-handed alpha
Helix 23
23
B
649 658Right-handed alpha
Helix 24
24
B
672 681Right-handed alpha
Helix 25
25
B
705 715Right-handed alpha
Helix 26
26
B
731 739Right-handed alpha
Helix 27
27
B
769 791Right-handed alpha
Helix 28
28
B
798 802Right-handed 310
Helix 29
29
B
803 808Right-handed 310
Helix 30
30
B
811 820Right-handed alpha
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There are 5 sheets in PDB entry 1F06. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 48first strand
Strand 2
A
28 35parallel
Strand 3
A
4 9parallel
Strand 4
A
61 64parallel
Strand 5
A
84 86parallel
Strand 6
A
112 114parallel
Strand 7
A
295 297parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 144first strand
Strand 2
A
244 253anti-parallel
Strand 3
A
258 267anti-parallel
Strand 4
B
758 767anti-parallel
Strand 5
B
744 753anti-parallel
Strand 6
B
638 644anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 148first strand
Strand 2
A
164 171anti-parallel
Strand 3
A
193 200anti-parallel
Strand 4
A
224 229parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
546 548first strand
Strand 2
B
528 535parallel
Strand 3
B
504 509parallel
Strand 4
B
561 564parallel
Strand 5
B
584 586parallel
Strand 6
B
612 614parallel
Strand 7
B
795 797parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
647 648first strand
Strand 2
B
662 671anti-parallel
Strand 3
B
693 701anti-parallel
Strand 4
B
724 729parallel
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