Analysis of interatomic Contacts of Structural Units in PDB entry:
1F07

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1F07 entry

There are 4 chains in PDB entry 1F07 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	PHE 321
B	MET 1001	PHE 1321
C	MET 2001	PHE 2321
D	MET 3001	PHE 3321

There are 60 helices in PDB entry 1F07. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	12	26	Right-handed alpha
Helix 2	2	A	41	52	Right-handed alpha
Helix 3	3	A	69	84	Right-handed alpha
Helix 4	4	A	96	103	Right-handed alpha
Helix 5	5	A	109	126	Right-handed alpha
Helix 6	6	A	154	165	Right-handed alpha
Helix 7	7	A	174	192	Right-handed alpha
Helix 8	8	A	195	199	Right-handed 310
Helix 9	9	A	212	230	Right-handed alpha
Helix 10	10	A	232	239	Right-handed alpha
Helix 11	11	A	244	254	Right-handed alpha
Helix 12	12	A	257	264	Right-handed alpha
Helix 13	13	A	266	274	Right-handed alpha
Helix 14	14	A	278	292	Right-handed alpha
Helix 15	15	A	306	320	Right-handed alpha
Helix 16	16	B	1012	1026	Right-handed alpha
Helix 17	17	B	1041	1052	Right-handed alpha
Helix 18	18	B	1069	1085	Right-handed alpha
Helix 19	19	B	1096	1103	Right-handed alpha
Helix 20	20	B	1109	1126	Right-handed alpha
Helix 21	21	B	1154	1165	Right-handed alpha
Helix 22	22	B	1174	1192	Right-handed alpha
Helix 23	23	B	1195	1199	Right-handed 310
Helix 24	24	B	1212	1230	Right-handed alpha
Helix 25	25	B	1232	1239	Right-handed alpha
Helix 26	26	B	1244	1255	Right-handed alpha
Helix 27	27	B	1257	1265	Right-handed alpha
Helix 28	28	B	1266	1274	Right-handed alpha
Helix 29	29	B	1278	1292	Right-handed alpha
Helix 30	30	B	1306	1320	Right-handed alpha
Helix 31	31	C	2012	2026	Right-handed alpha
Helix 32	32	C	2041	2052	Right-handed alpha
Helix 33	33	C	2069	2084	Right-handed alpha
Helix 34	34	C	2096	2103	Right-handed alpha
Helix 35	35	C	2109	2126	Right-handed alpha
Helix 36	36	C	2154	2165	Right-handed alpha
Helix 37	37	C	2174	2192	Right-handed alpha
Helix 38	38	C	2195	2199	Right-handed 310
Helix 39	39	C	2212	2230	Right-handed alpha
Helix 40	40	C	2232	2239	Right-handed alpha
Helix 41	41	C	2244	2255	Right-handed alpha
Helix 42	42	C	2257	2265	Right-handed alpha
Helix 43	43	C	2266	2274	Right-handed alpha
Helix 44	44	C	2278	2291	Right-handed alpha
Helix 45	45	C	2306	2320	Right-handed alpha
Helix 46	46	D	3012	3026	Right-handed alpha
Helix 47	47	D	3041	3052	Right-handed alpha
Helix 48	48	D	3069	3084	Right-handed alpha
Helix 49	49	D	3096	3104	Right-handed alpha
Helix 50	50	D	3109	3126	Right-handed alpha
Helix 51	51	D	3154	3165	Right-handed alpha
Helix 52	52	D	3174	3192	Right-handed alpha
Helix 53	53	D	3195	3199	Right-handed 310
Helix 54	54	D	3212	3230	Right-handed alpha
Helix 55	55	D	3232	3239	Right-handed alpha
Helix 56	56	D	3244	3256	Right-handed alpha
Helix 57	57	D	3257	3265	Right-handed alpha
Helix 58	58	D	3266	3274	Right-handed alpha
Helix 59	59	D	3278	3292	Right-handed alpha
Helix 60	60	D	3306	3320	Right-handed alpha

There are 8 sheets in PDB entry 1F07. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	60	first strand
Strand 2	A	30	33	parallel
Strand 3	A	2	7	parallel
Strand 4	A	296	303	parallel
Strand 5	A	200	209	parallel
Strand 6	A	167	170	parallel
Strand 7	A	148	151	parallel
Strand 8	A	90	92	parallel

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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	60	first strand
Strand 2	A	30	33	parallel
Strand 3	A	2	7	parallel
Strand 4	A	296	303	parallel
Strand 5	A	200	209	parallel
Strand 6	A	275	277	parallel

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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1057	1060	first strand
Strand 2	B	1030	1033	parallel
Strand 3	B	1002	1007	parallel
Strand 4	B	1296	1303	parallel
Strand 5	B	1200	1209	parallel
Strand 6	B	1167	1170	parallel
Strand 7	B	1148	1151	parallel
Strand 8	B	1090	1092	parallel

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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1057	1060	first strand
Strand 2	B	1030	1033	parallel
Strand 3	B	1002	1007	parallel
Strand 4	B	1296	1303	parallel
Strand 5	B	1200	1209	parallel
Strand 6	B	1275	1277	parallel

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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2057	2060	first strand
Strand 2	C	2030	2033	parallel
Strand 3	C	2002	2007	parallel
Strand 4	C	2296	2303	parallel
Strand 5	C	2200	2209	parallel
Strand 6	C	2167	2170	parallel
Strand 7	C	2148	2151	parallel
Strand 8	C	2090	2092	parallel

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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2057	2060	first strand
Strand 2	C	2030	2033	parallel
Strand 3	C	2002	2007	parallel
Strand 4	C	2296	2303	parallel
Strand 5	C	2200	2209	parallel
Strand 6	C	2275	2277	parallel

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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3057	3060	first strand
Strand 2	D	3030	3033	parallel
Strand 3	D	3002	3007	parallel
Strand 4	D	3296	3303	parallel
Strand 5	D	3200	3209	parallel
Strand 6	D	3167	3170	parallel
Strand 7	D	3148	3151	parallel
Strand 8	D	3090	3092	parallel

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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3057	3060	first strand
Strand 2	D	3030	3033	parallel
Strand 3	D	3002	3007	parallel
Strand 4	D	3296	3303	parallel
Strand 5	D	3200	3209	parallel
Strand 6	D	3275	3277	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1F07

Analysis of interatomic Contacts of Structural Units in PDB entry:
1F07