Analysis of interatomic Contacts of Structural Units in PDB entry:
1F08


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1F08 entry

There are 2 chains in PDB entry 1F08 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 156ASN 303
B
 ALA 159ASN 303
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 1F08. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
161 172Right-handed alpha
Helix 2
2
A
174 178Right-handed 310
Helix 3
3
A
201 214Right-handed alpha
Helix 4
4
A
242 254Right-handed alpha
Helix 5
5
A
257 259Right-handed 310
Helix 6
6
A
272 283Right-handed alpha
Helix 7
7
A
294 300Right-handed alpha
Helix 8
8
B
161 172Right-handed alpha
Helix 9
9
B
174 178Right-handed 310
Helix 10
10
B
201 214Right-handed alpha
Helix 11
11
B
242 254Right-handed alpha
Helix 12
12
B
257 259Right-handed 310
Helix 13
13
B
272 283Right-handed alpha
Helix 14
14
B
294 300Right-handed alpha
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There are 2 sheets in PDB entry 1F08. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 264first strand
Strand 2
A
190 197anti-parallel
Strand 3
A
228 239anti-parallel
Strand 4
A
216 226anti-parallel
Strand 5
A
287 290anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
260 264first strand
Strand 2
B
190 197anti-parallel
Strand 3
B
228 239anti-parallel
Strand 4
B
215 226anti-parallel
Strand 5
B
287 290anti-parallel
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