Analysis of interatomic Contacts of Structural Units in PDB entry:
1F0C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1F0C entry

There are 2 chains in PDB entry 1F0C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 35ALA 359
B
 SER 359ASN 394
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 1F0C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
35 44Right-handed alpha
Helix 2
2
A
53 68Right-handed alpha
Helix 3
3
A
70 78Right-handed alpha
Helix 4
4
A
127 135Right-handed alpha
Helix 5
5
A
151 165Right-handed alpha
Helix 6
6
A
199 203Right-handed 310
Helix 7
7
A
259 265Right-handed alpha
Helix 8
8
A
268 278Right-handed alpha
Helix 9
9
A
299 306Right-handed alpha
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There are 3 sheets in PDB entry 1F0C. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
363 365first strand
Strand 2
A
280 289parallel
Strand 3
A
214 232anti-parallel
Strand 4
A
204 211anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
363 365first strand
Strand 2
A
280 289parallel
Strand 3
A
214 232anti-parallel
Strand 4
A
237 243anti-parallel
Strand 5
A
248 255anti-parallel
Strand 6
B
370 376anti-parallel
Strand 7
B
382 388anti-parallel
Strand 8
A
50 52anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 145first strand
Strand 2
A
112 121parallel
Strand 3
A
180 193anti-parallel
Strand 4
A
344 356anti-parallel
Strand 5
A
328 340anti-parallel
Strand 6
A
291 298anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il