Analysis of interatomic Contacts of Structural Units in PDB entry:
1F0I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1F0I entry

There is 1 chain in PDB entry 1F0I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 6ALA 514
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 1F0I. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 22Right-handed alpha
Helix 2
2
A
23 26Right-handed 310
Helix 3
3
A
44 47Right-handed 310
Helix 4
4
A
64 80Right-handed alpha
Helix 5
5
A
95 112Right-handed alpha
Helix 6
6
A
132 146Right-handed alpha
Helix 7
7
A
147 150Right-handed 310
Helix 8
8
A
189 194Right-handed alpha
Helix 9
9
A
209 229Right-handed alpha
Helix 10
10
A
249 255Right-handed alpha
Helix 11
11
A
313 320Right-handed alpha
Helix 12
12
A
320 332Right-handed alpha
Helix 13
13
A
355 368Right-handed alpha
Helix 14
14
A
378 382Right-handed 310
Helix 15
15
A
396 412Right-handed alpha
Helix 16
16
A
413 425Right-handed alpha
Helix 17
17
A
480 491Right-handed alpha
Helix 18
18
A
491 500Right-handed alpha
Helix 19
19
A
501 503Right-handed 310
Helix 20
20
A
508 510Right-handed 310
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There are 2 sheets in PDB entry 1F0I. Click on sheet of interest to get list of strands forming it: A, B,

There are 12 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
511 512first strand
Strand 2
A
505 506anti-parallel
Strand 3
A
426 430anti-parallel
Strand 4
A
371 376parallel
Strand 5
A
336 341parallel
Strand 6
A
450 454anti-parallel
Strand 7
A
458 462anti-parallel
Strand 8
A
474 479anti-parallel
Strand 9
A
265 271anti-parallel
Strand 10
A
30 38anti-parallel
Strand 11
A
202 208anti-parallel
Strand 12
A
49 52anti-parallel
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There are 17 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
511 512first strand
Strand 2
A
505 506anti-parallel
Strand 3
A
426 430anti-parallel
Strand 4
A
371 376parallel
Strand 5
A
336 341parallel
Strand 6
A
450 454anti-parallel
Strand 7
A
458 462anti-parallel
Strand 8
A
474 479anti-parallel
Strand 9
A
265 271anti-parallel
Strand 10
A
30 38anti-parallel
Strand 11
A
202 208anti-parallel
Strand 12
A
180 184anti-parallel
Strand 13
A
173 176anti-parallel
Strand 14
A
84 90anti-parallel
Strand 15
A
116 123parallel
Strand 16
A
152 159parallel
Strand 17
A
236 240anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il