Analysis of interatomic Contacts of Structural Units in PDB entry:
1F1M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1F1M entry

There are 4 chains in PDB entry 1F1M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 40PRO 201
B
 PRO 40PRO 201
C
 PRO 40PRO 201
D
 PRO 40PRO 201
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 25 helices in PDB entry 1F1M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
41 74Right-handed alpha
Helix 2
2
A
93 112Right-handed alpha
Helix 3
3
A
120 141Right-handed alpha
Helix 4
4
A
141 146Right-handed alpha
Helix 5
5
A
151 160Right-handed alpha
Helix 6
6
A
169 197Right-handed alpha
Helix 7
7
B
41 74Right-handed alpha
Helix 8
8
B
93 114Right-handed alpha
Helix 9
9
B
120 141Right-handed alpha
Helix 10
10
B
141 146Right-handed alpha
Helix 11
11
B
151 160Right-handed alpha
Helix 12
12
B
169 197Right-handed alpha
Helix 13
13
C
41 74Right-handed alpha
Helix 14
14
C
93 113Right-handed alpha
Helix 15
15
C
120 141Right-handed alpha
Helix 16
16
C
141 146Right-handed alpha
Helix 17
17
C
151 160Right-handed alpha
Helix 18
18
C
169 197Right-handed alpha
Helix 19
19
C
198 200Right-handed 310
Helix 20
20
D
41 74Right-handed alpha
Helix 21
21
D
93 114Right-handed alpha
Helix 22
22
D
120 141Right-handed alpha
Helix 23
23
D
141 146Right-handed alpha
Helix 24
24
D
151 160Right-handed alpha
Helix 25
25
D
169 196Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 1F1M. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 79first strand
Strand 2
A
87 88anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 79first strand
Strand 2
B
87 88anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
78 79first strand
Strand 2
C
87 88anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
78 79first strand
Strand 2
D
87 88anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il