Analysis of interatomic Contacts of Structural Units in PDB entry:
1F29


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1F29 entry

There are 3 chains in PDB entry 1F29 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1GLY 212
B
 ALA 1GLY 212
C
 ALA 1GLY 212
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 21 helices in PDB entry 1F29. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 11Right-handed 310
Helix 2
2
A
24 41Right-handed alpha
Helix 3
3
A
49 57Right-handed alpha
Helix 4
4
A
61 65Right-handed 310
Helix 5
6
A
116 128Right-handed alpha
Helix 6
7
A
140 144Right-handed 310
Helix 7
8
A
198 202Right-handed 310
Helix 8
9
B
8 11Right-handed 310
Helix 9
10
B
24 41Right-handed alpha
Helix 10
11
B
49 57Right-handed alpha
Helix 11
12
B
61 65Right-handed 310
Helix 12
14
B
116 128Right-handed alpha
Helix 13
15
B
140 144Right-handed 310
Helix 14
16
B
198 202Right-handed 310
Helix 15
17
C
8 11Right-handed 310
Helix 16
18
C
24 41Right-handed alpha
Helix 17
19
C
49 57Right-handed alpha
Helix 18
20
C
61 65Right-handed 310
Helix 19
22
C
116 128Right-handed alpha
Helix 20
23
C
140 144Right-handed 310
Helix 21
24
C
198 202Right-handed 310
Back to top of page

There are 9 sheets in PDB entry 1F29. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 112first strand
Strand 2
A
206 210anti-parallel
Strand 3
A
130 134anti-parallel
Strand 4
A
159 167anti-parallel
Strand 5
A
4 6anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 112first strand
Strand 2
A
206 210anti-parallel
Strand 3
A
130 134anti-parallel
Strand 4
A
159 167anti-parallel
Strand 5
A
170 174anti-parallel
Strand 6
A
186 190anti-parallel
Strand 7
A
148 149parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 81first strand
Strand 2
A
102 106anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
109 112first strand
Strand 2
B
206 210anti-parallel
Strand 3
B
130 134anti-parallel
Strand 4
B
159 167anti-parallel
Strand 5
B
4 6anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
109 112first strand
Strand 2
B
206 210anti-parallel
Strand 3
B
130 134anti-parallel
Strand 4
B
159 167anti-parallel
Strand 5
B
170 174anti-parallel
Strand 6
B
186 190anti-parallel
Strand 7
B
148 149parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
79 81first strand
Strand 2
B
102 106anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
109 112first strand
Strand 2
C
206 210anti-parallel
Strand 3
C
130 134anti-parallel
Strand 4
C
159 167anti-parallel
Strand 5
C
4 6anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
109 112first strand
Strand 2
C
206 210anti-parallel
Strand 3
C
130 134anti-parallel
Strand 4
C
159 167anti-parallel
Strand 5
C
170 174anti-parallel
Strand 6
C
186 190anti-parallel
Strand 7
C
148 149parallel
Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
79 81first strand
Strand 2
C
102 106anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il