Analysis of interatomic Contacts of Structural Units in PDB entry:
1F2J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1F2J entry

There is 1 chain in PDB entry 1F2J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1ASP 357
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 1F2J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 11Right-handed 310
Helix 2
2
A
11 15Right-handed 310
Helix 3
3
A
21 33Right-handed alpha
Helix 4
4
A
45 55Right-handed alpha
Helix 5
5
A
61 74Right-handed alpha
Helix 6
6
A
77 80Right-handed 310
Helix 7
7
A
88 94Right-handed alpha
Helix 8
8
A
101 109Right-handed alpha
Helix 9
9
A
139 150Right-handed alpha
Helix 10
10
A
169 190Right-handed alpha
Helix 11
11
A
207 230Right-handed alpha
Helix 12
12
A
232 236Right-handed 310
Helix 13
13
A
254 270Right-handed alpha
Helix 14
14
A
285 297Right-handed alpha
Helix 15
15
A
312 324Right-handed alpha
Helix 16
16
A
326 328Right-handed 310
Helix 17
17
A
329 349Right-handed alpha
Helix 18
18
A
353 357Right-handed 310
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There are 2 sheets in PDB entry 1F2J. Click on sheet of interest to get list of strands forming it: A, B,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 42first strand
Strand 2
A
82 87parallel
Strand 3
A
112 116parallel
Strand 4
A
154 161parallel
Strand 5
A
193 200parallel
Strand 6
A
237 238parallel
Strand 7
A
276 279parallel
Strand 8
A
306 311parallel
Strand 9
A
38 42parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 123first strand
Strand 2
A
132 134anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il