Analysis of interatomic Contacts of Structural Units in PDB entry:
1F35


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1F35 entry

There are 2 chains in PDB entry 1F35 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2LEU 163
B
 ALA 1002LEU 1163
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 1F35. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 35Right-handed alpha
Helix 2
2
A
96 98Right-handed 310
Helix 3
3
A
118 136Right-handed alpha
Helix 4
4
A
150 152Right-handed 310
Helix 5
5
B
1018 1035Right-handed alpha
Helix 6
6
B
1096 1098Right-handed 310
Helix 7
7
B
1118 1136Right-handed alpha
Helix 8
8
B
1150 1152Right-handed 310
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There are 3 sheets in PDB entry 1F35. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 14first strand
Strand 2
A
154 162anti-parallel
Strand 3
A
63 72anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 17first strand
Strand 2
A
50 56anti-parallel
Strand 3
A
138 145anti-parallel
Strand 4
A
76 82anti-parallel
Strand 5
A
104 108anti-parallel
Strand 6
A
115 117anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1063 1072first strand
Strand 2
B
1154 1162anti-parallel
Strand 3
B
1010 1017anti-parallel
Strand 4
B
1050 1056anti-parallel
Strand 5
B
1138 1145anti-parallel
Strand 6
B
1076 1082anti-parallel
Strand 7
B
1104 1108anti-parallel
Strand 8
B
1115 1117anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il