Analysis of interatomic Contacts of Structural Units in PDB entry:
1F3P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1F3P entry

There is 1 chain in PDB entry 1F3P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 5ALA 405
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 1F3P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 29Right-handed alpha
Helix 2
2
A
48 53Right-handed 310
Helix 3
3
A
54 59Right-handed alpha
Helix 4
4
A
60 64Right-handed 310
Helix 5
5
A
67 71Right-handed 310
Helix 6
6
A
131 141Right-handed alpha
Helix 7
7
A
154 166Right-handed alpha
Helix 8
8
A
186 200Right-handed alpha
Helix 9
9
A
241 247Right-handed alpha
Helix 10
10
A
290 307Right-handed alpha
Helix 11
11
A
370 383Right-handed alpha
Helix 12
12
A
397 405Right-handed alpha
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There are 7 sheets in PDB entry 1F3P. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 78first strand
Strand 2
A
35 39parallel
Strand 3
A
10 13parallel
Strand 4
A
104 107parallel
Strand 5
A
268 270parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 86first strand
Strand 2
A
91 94anti-parallel
Strand 3
A
99 101anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 113first strand
Strand 2
A
237 239anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 128first strand
Strand 2
A
230 233parallel
Strand 3
A
147 151parallel
Strand 4
A
170 174parallel
Strand 5
A
203 205parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 213first strand
Strand 2
A
217 220anti-parallel
Strand 3
A
225 227anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
255 256first strand
Strand 2
A
275 278parallel
Strand 3
A
285 287anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
318 323first strand
Strand 2
A
326 332anti-parallel
Strand 3
A
361 368anti-parallel
Strand 4
A
350 358anti-parallel
Strand 5
A
338 345anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il