Analysis of interatomic Contacts of Structural Units in PDB entry:
1F3V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1F3V entry

There are 2 chains in PDB entry 1F3V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 8GLY 165
B
 LYS 331LEU 501
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 1F3V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
27 34Right-handed alpha
Helix 2
2
A
37 53Right-handed alpha
Helix 3
3
A
79 92Right-handed alpha
Helix 4
4
A
93 107Right-handed alpha
Helix 5
5
A
126 129Right-handed 310
Helix 6
6
A
131 142Right-handed alpha
Helix 7
7
A
149 163Right-handed alpha
Helix 8
8
B
331 348Right-handed alpha
Helix 9
9
B
360 370Right-handed alpha
Helix 10
10
B
399 403Right-handed 310
Helix 11
11
B
418 422Right-handed 310
Helix 12
12
B
453 457Right-handed 310
Helix 13
13
B
476 479Right-handed 310
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There are 4 sheets in PDB entry 1F3V. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 66first strand
Strand 2
A
71 78anti-parallel
Strand 3
A
12 21anti-parallel
Strand 4
A
114 120anti-parallel
Strand 5
A
123 124anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
353 359first strand
Strand 2
B
489 496anti-parallel
Strand 3
B
430 434anti-parallel
Strand 4
B
443 447anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
467 474first strand
Strand 2
B
406 414anti-parallel
Strand 3
B
389 395anti-parallel
Strand 4
B
376 377anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
467 474first strand
Strand 2
B
406 414anti-parallel
Strand 3
B
389 395anti-parallel
Strand 4
B
381 382anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il