Analysis of interatomic Contacts of Structural Units in PDB entry:
1F5F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1F5F entry

There is 1 chain in PDB entry 1F5F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 13CYS 188
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 3 helices in PDB entry 1F5F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
35 37Right-handed 310
Helix 2
2
A
149 153Right-handed 310
Helix 3
3
A
172 174Right-handed 310
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There are 2 sheets in PDB entry 1F5F. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 17first strand
Strand 2
A
163 169anti-parallel
Strand 3
A
41 48anti-parallel
Strand 4
A
101 108anti-parallel
Strand 5
A
111 116anti-parallel
Strand 6
A
119 124anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 90first strand
Strand 2
A
75 81anti-parallel
Strand 3
A
65 72anti-parallel
Strand 4
A
53 61anti-parallel
Strand 5
A
138 143anti-parallel
Strand 6
A
28 33anti-parallel
Strand 7
A
176 180anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il