Analysis of interatomic Contacts of Structural Units in PDB entry:
1F5T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1F5T entry

There are 6 chains in PDB entry 1F5T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 A 295 T 337
F
 T 396 G 438
A
 LYS 1002LYS 1121
B
 LYS 2002LYS 2121
C
 LYS 3002LYS 3121
D
 LYS 4002LYS 4121
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 1F5T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1006 1021Right-handed alpha
Helix 2
2
A
1026 1035Right-handed alpha
Helix 3
3
A
1037 1051Right-handed alpha
Helix 4
4
A
1065 1088Right-handed alpha
Helix 5
5
A
1093 1095Right-handed 310
Helix 6
6
A
1096 1105Right-handed alpha
Helix 7
7
A
1109 1120Right-handed alpha
Helix 8
8
B
2006 2021Right-handed alpha
Helix 9
9
B
2026 2034Right-handed alpha
Helix 10
10
B
2037 2051Right-handed alpha
Helix 11
11
B
2065 2088Right-handed alpha
Helix 12
12
B
2093 2105Right-handed alpha
Helix 13
13
B
2109 2121Right-handed alpha
Helix 14
14
C
3006 3021Right-handed alpha
Helix 15
15
C
3026 3035Right-handed alpha
Helix 16
16
C
3037 3051Right-handed alpha
Helix 17
17
C
3065 3089Right-handed alpha
Helix 18
18
C
3093 3095Right-handed 310
Helix 19
19
C
3096 3105Right-handed alpha
Helix 20
20
C
3109 3119Right-handed alpha
Helix 21
21
D
4006 4021Right-handed alpha
Helix 22
22
D
4026 4034Right-handed alpha
Helix 23
23
D
4037 4051Right-handed alpha
Helix 24
24
D
4065 4089Right-handed alpha
Helix 25
25
D
4096 4105Right-handed alpha
Helix 26
26
D
4109 4120Right-handed alpha
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There are 3 sheets in PDB entry 1F5T. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1054 1056first strand
Strand 2
A
1062 1064anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2054 2056first strand
Strand 2
B
2062 2064anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3054 3056first strand
Strand 2
C
3062 3064anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il