Analysis of interatomic Contacts of Structural Units in PDB entry:
1F5V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1F5V entry

There are 2 chains in PDB entry 1F5V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 240
B
 MET 1ARG 240
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 1F5V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 10Right-handed alpha
Helix 2
2
A
23 36Right-handed alpha
Helix 3
3
A
39 43Right-handed 310
Helix 4
4
A
53 64Right-handed alpha
Helix 5
5
A
68 73Right-handed alpha
Helix 6
6
A
83 90Right-handed alpha
Helix 7
7
A
97 122Right-handed alpha
Helix 8
8
A
130 134Right-handed 310
Helix 9
9
A
135 143Right-handed alpha
Helix 10
10
A
171 175Right-handed alpha
Helix 11
11
A
185 202Right-handed alpha
Helix 12
12
A
211 221Right-handed alpha
Helix 13
13
A
227 235Right-handed alpha
Helix 14
14
B
2 10Right-handed alpha
Helix 15
15
B
23 36Right-handed alpha
Helix 16
16
B
39 43Right-handed 310
Helix 17
17
B
53 64Right-handed alpha
Helix 18
18
B
68 73Right-handed alpha
Helix 19
19
B
83 90Right-handed alpha
Helix 20
20
B
97 122Right-handed alpha
Helix 21
21
B
130 134Right-handed 310
Helix 22
22
B
135 143Right-handed alpha
Helix 23
23
B
171 175Right-handed alpha
Helix 24
24
B
185 202Right-handed alpha
Helix 25
25
B
211 221Right-handed alpha
Helix 26
26
B
227 235Right-handed alpha
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There are 2 sheets in PDB entry 1F5V. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 129first strand
Strand 2
A
149 158anti-parallel
Strand 3
A
75 82anti-parallel
Strand 4
A
46 50anti-parallel
Strand 5
B
176 178parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 178first strand
Strand 2
B
46 50parallel
Strand 3
B
75 82anti-parallel
Strand 4
B
149 158anti-parallel
Strand 5
B
125 129anti-parallel
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