Analysis of interatomic Contacts of Structural Units in PDB entry:
1F6F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1F6F entry

There are 3 chains in PDB entry 1F6F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1CYS 197
B
 GLY 5PRO 203
C
 LYS 6ASN 204
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 1F6F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 8Right-handed 310
Helix 2
2
A
17 45Right-handed alpha
Helix 3
3
A
60 65Right-handed 310
Helix 4
4
A
70 77Right-handed alpha
Helix 5
5
A
78 92Right-handed alpha
Helix 6
6
A
93 106Right-handed alpha
Helix 7
7
A
112 140Right-handed alpha
Helix 8
8
A
151 159Right-handed 310
Helix 9
9
A
161 195Right-handed alpha
Helix 10
10
B
98 100Right-handed 310
Helix 11
11
C
65 69Right-handed 310
Helix 12
12
C
96 100Right-handed 310
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There are 9 sheets in PDB entry 1F6F. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 13first strand
Strand 2
B
20 25anti-parallel
Strand 3
B
61 64anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 50first strand
Strand 2
B
35 42anti-parallel
Strand 3
B
74 83anti-parallel
Strand 4
B
86 89anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 50first strand
Strand 2
B
35 42anti-parallel
Strand 3
B
74 83anti-parallel
Strand 4
B
93 96anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 113first strand
Strand 2
B
123 128anti-parallel
Strand 3
B
166 169anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
157 162first strand
Strand 2
B
142 150anti-parallel
Strand 3
B
177 186anti-parallel
Strand 4
B
198 201anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
8 13first strand
Strand 2
C
20 25anti-parallel
Strand 3
C
61 64anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
49 50first strand
Strand 2
C
35 42anti-parallel
Strand 3
C
75 82anti-parallel
Strand 4
C
93 95anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
107 114first strand
Strand 2
C
122 128anti-parallel
Strand 3
C
166 169anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
157 162first strand
Strand 2
C
143 148anti-parallel
Strand 3
C
177 185anti-parallel
Strand 4
C
198 201anti-parallel
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