Analysis of interatomic Contacts of Structural Units in PDB entry:
1F6M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1F6M entry

There are 8 chains in PDB entry 1F6M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1LYS 320
B
 GLY 1LYS 320
C
 SER 1ALA 108
D
 SER 1ALA 108
E
 GLY 1LYS 320
F
 GLY 1LYS 320
G
 SER 1ALA 108
H
 SER 1ALA 108
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 1F6M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 27Right-handed alpha
Helix 2
2
A
41 46Right-handed 310
Helix 3
3
A
60 75Right-handed alpha
Helix 4
4
A
121 127Right-handed alpha
Helix 5
5
A
135 140Right-handed alpha
Helix 6
6
A
141 144Right-handed 310
Helix 7
7
A
154 165Right-handed alpha
Helix 8
8
A
183 197Right-handed alpha
Helix 9
9
A
249 253Right-handed 310
Helix 10
10
A
285 289Right-handed 310
Helix 11
11
A
294 319Right-handed alpha
Helix 12
12
B
14 26Right-handed alpha
Helix 13
13
B
41 46Right-handed 310
Helix 14
14
B
60 75Right-handed alpha
Helix 15
15
B
121 127Right-handed alpha
Helix 16
16
B
135 140Right-handed alpha
Helix 17
17
B
141 144Right-handed 310
Helix 18
18
B
154 165Right-handed alpha
Helix 19
19
B
183 197Right-handed alpha
Helix 20
20
B
285 289Right-handed 310
Helix 21
21
B
294 320Right-handed alpha
Helix 22
22
C
32 37Right-handed alpha
Helix 23
23
C
37 49Right-handed alpha
Helix 24
24
C
65 70Right-handed alpha
Helix 25
25
C
95 106Right-handed alpha
Helix 26
26
D
32 37Right-handed alpha
Helix 27
27
D
38 47Right-handed alpha
Helix 28
28
D
65 70Right-handed alpha
Helix 29
29
D
95 107Right-handed alpha
Helix 30
30
E
14 27Right-handed alpha
Helix 31
31
E
41 46Right-handed 310
Helix 32
32
E
60 75Right-handed alpha
Helix 33
33
E
121 127Right-handed alpha
Helix 34
34
E
135 140Right-handed alpha
Helix 35
35
E
141 144Right-handed 310
Helix 36
36
E
154 165Right-handed alpha
Helix 37
37
E
183 197Right-handed alpha
Helix 38
38
E
249 253Right-handed 310
Helix 39
39
E
285 289Right-handed 310
Helix 40
40
E
294 319Right-handed alpha
Helix 41
41
F
14 26Right-handed alpha
Helix 42
42
F
41 46Right-handed 310
Helix 43
43
F
60 75Right-handed alpha
Helix 44
44
F
121 127Right-handed alpha
Helix 45
45
F
135 140Right-handed alpha
Helix 46
46
F
141 144Right-handed 310
Helix 47
47
F
154 165Right-handed alpha
Helix 48
48
F
183 197Right-handed alpha
Helix 49
49
F
285 289Right-handed 310
Helix 50
50
F
294 319Right-handed alpha
Helix 51
51
G
32 37Right-handed alpha
Helix 52
52
G
37 49Right-handed alpha
Helix 53
53
G
65 70Right-handed alpha
Helix 54
54
G
95 106Right-handed alpha
Helix 55
55
H
32 37Right-handed alpha
Helix 56
56
H
38 47Right-handed alpha
Helix 57
57
H
65 70Right-handed alpha
Helix 58
58
H
95 107Right-handed alpha
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There are 28 sheets in PDB entry 1F6M. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 80first strand
Strand 2
A
32 34parallel
Strand 3
A
4 11parallel
Strand 4
A
101 110parallel
Strand 5
A
94 98anti-parallel
Strand 6
A
84 88anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 80first strand
Strand 2
A
32 34parallel
Strand 3
A
4 11parallel
Strand 4
A
101 110parallel
Strand 5
A
281 283parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 116first strand
Strand 2
A
245 247anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 133first strand
Strand 2
A
239 241parallel
Strand 3
A
147 151parallel
Strand 4
A
170 175parallel
Strand 5
A
199 203parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 213first strand
Strand 2
A
216 222anti-parallel
Strand 3
A
232 235anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 259first strand
Strand 2
A
262 263anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 80first strand
Strand 2
B
31 34parallel
Strand 3
B
3 11parallel
Strand 4
B
101 110parallel
Strand 5
B
94 98anti-parallel
Strand 6
B
84 88anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 80first strand
Strand 2
B
31 34parallel
Strand 3
B
3 11parallel
Strand 4
B
101 110parallel
Strand 5
B
281 283parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
114 116first strand
Strand 2
B
245 247anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
132 133first strand
Strand 2
B
238 241parallel
Strand 3
B
147 151parallel
Strand 4
B
170 174parallel
Strand 5
B
199 202parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
205 213first strand
Strand 2
B
216 224anti-parallel
Strand 3
B
231 234anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
258 259first strand
Strand 2
B
262 263anti-parallel
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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
6 7first strand
Strand 2
C
56 59parallel
Strand 3
C
22 28parallel
Strand 4
C
77 82anti-parallel
Strand 5
C
86 91anti-parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
54 59first strand
Strand 2
D
23 28parallel
Strand 3
D
77 80anti-parallel
Strand 4
D
88 91anti-parallel
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There are 6 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
78 80first strand
Strand 2
E
32 34parallel
Strand 3
E
4 11parallel
Strand 4
E
101 110parallel
Strand 5
E
94 98anti-parallel
Strand 6
E
84 88anti-parallel
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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
78 80first strand
Strand 2
E
32 34parallel
Strand 3
E
4 11parallel
Strand 4
E
101 110parallel
Strand 5
E
281 283parallel
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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
114 116first strand
Strand 2
E
245 247anti-parallel
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There are 5 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
132 133first strand
Strand 2
E
239 241parallel
Strand 3
E
147 151parallel
Strand 4
E
170 175parallel
Strand 5
E
199 203parallel
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There are 3 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
207 213first strand
Strand 2
E
216 222anti-parallel
Strand 3
E
232 235anti-parallel
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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
258 259first strand
Strand 2
E
262 263anti-parallel
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There are 6 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
78 80first strand
Strand 2
F
32 34parallel
Strand 3
F
3 11parallel
Strand 4
F
101 110parallel
Strand 5
F
94 98anti-parallel
Strand 6
F
84 88anti-parallel
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There are 5 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
78 80first strand
Strand 2
F
32 34parallel
Strand 3
F
3 11parallel
Strand 4
F
101 110parallel
Strand 5
F
281 283parallel
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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
114 116first strand
Strand 2
F
245 247anti-parallel
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There are 5 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
132 133first strand
Strand 2
F
239 241parallel
Strand 3
F
147 151parallel
Strand 4
F
170 174parallel
Strand 5
F
199 202parallel
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There are 3 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
205 213first strand
Strand 2
F
216 224anti-parallel
Strand 3
F
231 235anti-parallel
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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
258 259first strand
Strand 2
F
262 263anti-parallel
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There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
6 7first strand
Strand 2
G
56 59parallel
Strand 3
G
22 28parallel
Strand 4
G
77 82anti-parallel
Strand 5
G
86 91anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
54 59first strand
Strand 2
H
23 28parallel
Strand 3
H
77 80anti-parallel
Strand 4
H
88 91anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il