Analysis of interatomic Contacts of Structural Units in PDB entry:
1F6R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1F6R entry

There are 6 chains in PDB entry 1F6R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 1LEU 123
B
 GLU 1LYS 122
C
 GLU 1GLU 121
D
 GLU 1CYS 120
E
 GLU 1GLU 121
F
 GLU 1CYS 120
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 1F6R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 12Right-handed alpha
Helix 2
2
A
13 16Right-handed 310
Helix 3
3
A
17 21Right-handed 310
Helix 4
4
A
22 35Right-handed alpha
Helix 5
5
A
77 82Right-handed 310
Helix 6
6
A
85 99Right-handed alpha
Helix 7
7
A
100 103Right-handed 310
Helix 8
8
A
104 111Right-handed alpha
Helix 9
9
A
114 119Right-handed 310
Helix 10
10
B
4 12Right-handed alpha
Helix 11
11
B
13 16Right-handed 310
Helix 12
12
B
17 21Right-handed 310
Helix 13
13
B
22 35Right-handed alpha
Helix 14
14
B
77 82Right-handed 310
Helix 15
15
B
85 99Right-handed alpha
Helix 16
16
B
100 103Right-handed 310
Helix 17
17
B
104 111Right-handed alpha
Helix 18
18
B
115 119Right-handed 310
Helix 19
19
C
4 12Right-handed alpha
Helix 20
20
C
13 16Right-handed 310
Helix 21
21
C
17 21Right-handed 310
Helix 22
22
C
22 35Right-handed alpha
Helix 23
23
C
77 81Right-handed 310
Helix 24
24
C
85 99Right-handed alpha
Helix 25
25
C
100 103Right-handed 310
Helix 26
26
C
104 111Right-handed alpha
Helix 27
27
C
114 119Right-handed 310
Helix 28
28
D
4 12Right-handed alpha
Helix 29
29
D
13 16Right-handed 310
Helix 30
30
D
17 21Right-handed 310
Helix 31
31
D
22 35Right-handed alpha
Helix 32
32
D
77 81Right-handed 310
Helix 33
33
D
85 99Right-handed alpha
Helix 34
34
D
100 103Right-handed 310
Helix 35
35
D
104 111Right-handed alpha
Helix 36
36
E
4 12Right-handed alpha
Helix 37
37
E
13 16Right-handed 310
Helix 38
38
E
17 21Right-handed 310
Helix 39
39
E
22 35Right-handed alpha
Helix 40
40
E
77 81Right-handed 310
Helix 41
41
E
85 99Right-handed alpha
Helix 42
42
E
100 103Right-handed 310
Helix 43
43
E
104 111Right-handed alpha
Helix 44
44
E
115 119Right-handed 310
Helix 45
45
F
4 12Right-handed alpha
Helix 46
46
F
13 16Right-handed 310
Helix 47
47
F
17 21Right-handed 310
Helix 48
48
F
22 35Right-handed alpha
Helix 49
49
F
77 81Right-handed 310
Helix 50
50
F
85 99Right-handed alpha
Helix 51
51
F
100 103Right-handed 310
Helix 52
52
F
104 111Right-handed alpha
Helix 53
53
F
114 119Right-handed 310
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There are 6 sheets in PDB entry 1F6R. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 43first strand
Strand 2
A
48 50anti-parallel
Strand 3
A
55 56anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 43first strand
Strand 2
B
48 50anti-parallel
Strand 3
B
55 56anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
41 43first strand
Strand 2
C
48 50anti-parallel
Strand 3
C
55 56anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
41 43first strand
Strand 2
D
48 50anti-parallel
Strand 3
D
55 56anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
41 43first strand
Strand 2
E
48 50anti-parallel
Strand 3
E
55 56anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
41 43first strand
Strand 2
F
48 50anti-parallel
Strand 3
F
55 56anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il