Analysis of interatomic Contacts of Structural Units in PDB entry:
1F77


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1F77 entry

There are 2 chains in PDB entry 1F77 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 2LYS 214
B
 ASP 2THR 213
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 1F77. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 9Right-handed 310
Helix 2
2
A
10 23Right-handed alpha
Helix 3
3
A
47 51Right-handed 310
Helix 4
4
A
59 66Right-handed alpha
Helix 5
5
A
135 150Right-handed alpha
Helix 6
6
A
185 190Right-handed alpha
Helix 7
7
A
191 194Right-handed 310
Helix 8
8
B
5 9Right-handed 310
Helix 9
9
B
10 23Right-handed alpha
Helix 10
10
B
47 51Right-handed 310
Helix 11
11
B
59 67Right-handed alpha
Helix 12
12
B
135 151Right-handed alpha
Helix 13
13
B
185 190Right-handed alpha
Helix 14
14
B
191 194Right-handed 310
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There are 8 sheets in PDB entry 1F77. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 31first strand
Strand 2
A
70 75anti-parallel
Strand 3
A
97 99anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 36first strand
Strand 2
A
40 43anti-parallel
Strand 3
A
52 56anti-parallel
Strand 4
A
90 94parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 130first strand
Strand 2
A
103 116anti-parallel
Strand 3
A
204 212parallel
Strand 4
A
161 168anti-parallel
Strand 5
A
173 177anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 134first strand
Strand 2
A
198 200anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 31first strand
Strand 2
B
70 75anti-parallel
Strand 3
B
97 99anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 36first strand
Strand 2
B
40 43anti-parallel
Strand 3
B
53 56anti-parallel
Strand 4
B
91 94parallel
Strand 5
B
77 78anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
119 130first strand
Strand 2
B
103 116anti-parallel
Strand 3
B
204 212parallel
Strand 4
B
161 168anti-parallel
Strand 5
B
173 177anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
132 134first strand
Strand 2
B
198 200anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il