Analysis of interatomic Contacts of Structural Units in PDB entry:
1F7V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1F7V entry

There are 10 chains in PDB entry 1F7V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 U 902 U 908
B
 C 911 A 915
B
 G 917 G 918
B
 C 920 C 925
B
 C 928 A 946
B
 U 948 U 948
B
 C 950 G 953
B
 C 956 A 957
B
 G 959 G 973
A
 ALA 2MET 607
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 34 helices in PDB entry 1F7V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 13Right-handed alpha
Helix 2
2
A
20 24Right-handed 310
Helix 3
3
A
30 48Right-handed alpha
Helix 4
4
A
50 55Right-handed alpha
Helix 5
5
A
56 58Right-handed 310
Helix 6
6
A
74 77Right-handed 310
Helix 7
7
A
82 93Right-handed alpha
Helix 8
8
A
115 131Right-handed alpha
Helix 9
9
A
132 134Right-handed 310
Helix 10
10
A
162 179Right-handed alpha
Helix 11
11
A
193 207Right-handed alpha
Helix 12
12
A
208 215Right-handed alpha
Helix 13
13
A
215 234Right-handed alpha
Helix 14
14
A
239 242Right-handed 310
Helix 15
15
A
243 258Right-handed alpha
Helix 16
16
A
261 283Right-handed alpha
Helix 17
17
A
295 297Right-handed 310
Helix 18
18
A
298 312Right-handed alpha
Helix 19
19
A
327 329Right-handed 310
Helix 20
20
A
346 363Right-handed alpha
Helix 21
21
A
372 374Right-handed 310
Helix 22
22
A
375 389Right-handed alpha
Helix 23
23
A
391 395Right-handed 310
Helix 24
24
A
417 435Right-handed alpha
Helix 25
25
A
436 442Right-handed alpha
Helix 26
26
A
445 464Right-handed alpha
Helix 27
27
A
474 480Right-handed alpha
Helix 28
28
A
485 502Right-handed alpha
Helix 29
29
A
507 513Right-handed alpha
Helix 30
30
A
515 519Right-handed 310
Helix 31
31
A
521 532Right-handed alpha
Helix 32
32
A
533 545Right-handed alpha
Helix 33
33
A
546 566Right-handed alpha
Helix 34
34
A
574 600Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 1F7V. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 60first strand
Strand 2
A
69 72anti-parallel
Strand 3
A
109 114anti-parallel
Strand 4
A
100 106anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
290 293first strand
Strand 2
A
181 189parallel
Strand 3
A
143 149parallel
Strand 4
A
366 370parallel
Strand 5
A
397 399parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
316 318first strand
Strand 2
A
321 325anti-parallel
Strand 3
A
335 339anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
405 406first strand
Strand 2
A
471 472parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il