Analysis of interatomic Contacts of Structural Units in PDB entry:
1F80


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1F80 entry

There are 9 chains in PDB entry 1F80 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2LEU 119
B
 ALA 2LEU 119
C
 TYR 3ARG 118
D
 SER 0ASP 35
D
 LEU 37GLN 73
E
 ALA 1ASP 35
E
 LEU 37ASN 74
F
 ALA 1ASP 35
F
 LEU 37GLN 73
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 1F80. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 17Right-handed alpha
Helix 2
3
A
31 40Right-handed alpha
Helix 3
4
A
42 64Right-handed alpha
Helix 4
5
A
73 75Right-handed 310
Helix 5
6
B
12 22Right-handed alpha
Helix 6
7
B
24 30Right-handed alpha
Helix 7
8
B
31 40Right-handed alpha
Helix 8
9
B
42 64Right-handed alpha
Helix 9
10
B
73 75Right-handed 310
Helix 10
11
C
12 17Right-handed alpha
Helix 11
13
C
31 40Right-handed alpha
Helix 12
14
C
42 64Right-handed alpha
Helix 13
15
C
73 77Right-handed 310
Helix 14
16
D
1 15Right-handed alpha
Helix 15
17
D
27 32Right-handed alpha
Helix 16
18
D
37 50Right-handed alpha
Helix 17
19
D
55 62Right-handed alpha
Helix 18
20
D
64 72Right-handed alpha
Helix 19
21
E
1 16Right-handed alpha
Helix 20
22
E
27 33Right-handed alpha
Helix 21
23
E
37 50Right-handed alpha
Helix 22
24
E
55 61Right-handed alpha
Helix 23
25
E
64 74Right-handed alpha
Helix 24
26
F
1 15Right-handed alpha
Helix 25
27
F
37 50Right-handed alpha
Helix 26
28
F
57 61Right-handed 310
Helix 27
29
F
64 73Right-handed alpha
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There are 6 sheets in PDB entry 1F80. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 11first strand
Strand 2
A
109 118anti-parallel
Strand 3
A
97 105anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 81first strand
Strand 2
A
87 91anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 11first strand
Strand 2
B
109 117anti-parallel
Strand 3
B
98 105anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 81first strand
Strand 2
B
87 91anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 11first strand
Strand 2
C
109 117anti-parallel
Strand 3
C
98 105anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
78 81first strand
Strand 2
C
87 90anti-parallel
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