Analysis of interatomic Contacts of Structural Units in PDB entry:
1F82


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1F82 entry

There is 1 chain in PDB entry 1F82 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 1SER 424
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 1F82. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
23 27Right-handed 310
Helix 2
2
A
80 99Right-handed alpha
Helix 3
3
A
101 114Right-handed alpha
Helix 4
4
A
182 184Right-handed 310
Helix 5
5
A
222 239Right-handed alpha
Helix 6
6
A
265 272Right-handed alpha
Helix 7
7
A
274 279Right-handed 310
Helix 8
8
A
280 305Right-handed alpha
Helix 9
9
A
315 328Right-handed alpha
Helix 10
11
A
356 365Right-handed alpha
Helix 11
12
A
399 403Right-handed 310
Helix 12
13
A
408 411Right-handed 310
Helix 13
14
A
416 420Right-handed 310
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There are 6 sheets in PDB entry 1F82. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 154first strand
Strand 2
A
136 139anti-parallel
Strand 3
A
18 22anti-parallel
Strand 4
A
33 39anti-parallel
Strand 5
A
42 45anti-parallel
Strand 6
A
157 160parallel
Strand 7
A
190 193parallel
Strand 8
A
170 172anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 176first strand
Strand 2
A
179 180anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 199first strand
Strand 2
A
380 381anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 202first strand
Strand 2
A
219 220anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
247 248first strand
Strand 2
A
263 264anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
329 331first strand
Strand 2
A
337 339anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il