Analysis of interatomic Contacts of Structural Units in PDB entry:
1F8F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1F8F entry

There is 1 chain in PDB entry 1F8F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 4ALA 371
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 1F8F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
44 52Right-handed alpha
Helix 2
2
A
97 102Right-handed alpha
Helix 3
3
A
103 103Right-handed 310
Helix 4
4
A
104 108Right-handed 310
Helix 5
5
A
110 115Right-handed alpha
Helix 6
6
A
138 142Right-handed 310
Helix 7
7
A
164 168Right-handed 310
Helix 8
8
A
168 172Right-handed 310
Helix 9
9
A
173 184Right-handed alpha
Helix 10
10
A
200 214Right-handed alpha
Helix 11
11
A
224 235Right-handed alpha
Helix 12
12
A
246 255Right-handed alpha
Helix 13
13
A
268 278Right-handed alpha
Helix 14
14
A
300 307Right-handed alpha
Helix 15
15
A
315 319Right-handed 310
Helix 16
16
A
320 334Right-handed alpha
Helix 17
17
A
338 341Right-handed 310
Helix 18
18
A
350 360Right-handed alpha
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There are 4 sheets in PDB entry 1F8F. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 11first strand
Strand 2
A
20 26anti-parallel
Strand 3
A
127 128anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 159first strand
Strand 2
A
86 89anti-parallel
Strand 3
A
66 74anti-parallel
Strand 4
A
33 42anti-parallel
Strand 5
A
148 152anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 159first strand
Strand 2
A
86 89anti-parallel
Strand 3
A
66 74anti-parallel
Strand 4
A
33 42anti-parallel
Strand 5
A
365 369anti-parallel
Strand 6
A
343 347parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 241first strand
Strand 2
A
217 222parallel
Strand 3
A
193 197parallel
Strand 4
A
259 264parallel
Strand 5
A
279 287parallel
Strand 6
A
310 313parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il