Analysis of interatomic Contacts of Structural Units in PDB entry:
1F8G

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1F8G entry

There are 4 chains in PDB entry 1F8G (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MSE 1	ALA 384
B	MSE 1	ALA 384
C	MSE 1	PRO 377
D	MSE 1	THR 380

There are 74 helices in PDB entry 1F8G. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	2	A	40	44	Right-handed 310
Helix 2	3	A	46	54	Right-handed alpha
Helix 3	4	A	60	66	Right-handed alpha
Helix 4	5	A	79	83	Right-handed 310
Helix 5	6	A	86	90	Right-handed 310
Helix 6	7	A	101	104	Right-handed 310
Helix 7	8	A	105	115	Right-handed alpha
Helix 8	9	A	123	125	Right-handed 310
Helix 9	10	A	128	134	Right-handed 310
Helix 10	11	A	135	156	Right-handed alpha
Helix 11	12	A	181	194	Right-handed alpha
Helix 12	13	A	206	214	Right-handed alpha
Helix 13	14	A	240	256	Right-handed alpha
Helix 14	15	A	277	283	Right-handed alpha
Helix 15	16	A	294	298	Right-handed 310
Helix 16	17	A	322	326	Right-handed 310
Helix 17	18	A	327	344	Right-handed alpha
Helix 18	19	A	360	366	Right-handed alpha
Helix 19	20	A	376	380	Right-handed 310
Helix 20	22	B	40	44	Right-handed 310
Helix 21	23	B	46	53	Right-handed alpha
Helix 22	24	B	60	67	Right-handed alpha
Helix 23	25	B	79	83	Right-handed 310
Helix 24	26	B	86	90	Right-handed 310
Helix 25	27	B	105	115	Right-handed alpha
Helix 26	28	B	123	125	Right-handed 310
Helix 27	29	B	128	134	Right-handed 310
Helix 28	30	B	135	156	Right-handed alpha
Helix 29	31	B	181	194	Right-handed alpha
Helix 30	32	B	206	214	Right-handed alpha
Helix 31	33	B	222	228	Right-handed alpha
Helix 32	34	B	240	256	Right-handed alpha
Helix 33	35	B	277	283	Right-handed alpha
Helix 34	36	B	294	298	Right-handed 310
Helix 35	37	B	322	327	Right-handed alpha
Helix 36	38	B	327	344	Right-handed alpha
Helix 37	39	B	360	366	Right-handed alpha
Helix 38	41	C	40	44	Right-handed 310
Helix 39	42	C	46	53	Right-handed alpha
Helix 40	43	C	60	66	Right-handed alpha
Helix 41	44	C	79	83	Right-handed 310
Helix 42	45	C	86	90	Right-handed 310
Helix 43	46	C	101	104	Right-handed 310
Helix 44	47	C	105	115	Right-handed alpha
Helix 45	48	C	123	125	Right-handed 310
Helix 46	49	C	128	134	Right-handed 310
Helix 47	50	C	135	156	Right-handed alpha
Helix 48	51	C	181	194	Right-handed alpha
Helix 49	52	C	206	214	Right-handed alpha
Helix 50	53	C	224	229	Right-handed 310
Helix 51	54	C	240	256	Right-handed alpha
Helix 52	55	C	277	283	Right-handed alpha
Helix 53	56	C	294	298	Right-handed 310
Helix 54	57	C	322	326	Right-handed 310
Helix 55	58	C	327	344	Right-handed alpha
Helix 56	59	C	360	366	Right-handed alpha
Helix 57	61	D	40	44	Right-handed 310
Helix 58	62	D	46	53	Right-handed alpha
Helix 59	63	D	60	67	Right-handed alpha
Helix 60	64	D	79	83	Right-handed 310
Helix 61	65	D	86	90	Right-handed 310
Helix 62	66	D	101	104	Right-handed 310
Helix 63	67	D	105	115	Right-handed alpha
Helix 64	68	D	123	125	Right-handed 310
Helix 65	69	D	128	134	Right-handed 310
Helix 66	70	D	135	156	Right-handed alpha
Helix 67	71	D	181	194	Right-handed alpha
Helix 68	72	D	206	214	Right-handed alpha
Helix 69	73	D	240	256	Right-handed alpha
Helix 70	74	D	277	283	Right-handed alpha
Helix 71	75	D	294	298	Right-handed 310
Helix 72	76	D	322	326	Right-handed 310
Helix 73	77	D	327	344	Right-handed alpha
Helix 74	78	D	360	366	Right-handed alpha

There are 13 sheets in PDB entry 1F8G. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	58	first strand
Strand 2	A	32	36	parallel
Strand 3	A	2	5	parallel
Strand 4	A	70	75	parallel
Strand 5	A	95	99	parallel
Strand 6	A	118	121	parallel
Strand 7	A	367	370	anti-parallel
Strand 8	A	373	374	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	163	165	first strand
Strand 2	A	168	170	anti-parallel

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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	217	218	first strand
Strand 2	A	197	201	parallel
Strand 3	A	174	178	parallel
Strand 4	A	260	263	parallel
Strand 5	A	289	292	parallel
Strand 6	A	315	318	parallel
Strand 7	A	309	312	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	347	348	first strand
Strand 2	A	353	354	anti-parallel

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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	58	first strand
Strand 2	B	32	36	parallel
Strand 3	B	2	5	parallel
Strand 4	B	70	75	parallel
Strand 5	B	95	99	parallel
Strand 6	B	118	121	parallel
Strand 7	B	367	370	anti-parallel
Strand 8	B	373	374	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	163	165	first strand
Strand 2	B	168	170	anti-parallel

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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	217	218	first strand
Strand 2	B	197	201	parallel
Strand 3	B	174	178	parallel
Strand 4	B	260	263	parallel
Strand 5	B	289	292	parallel
Strand 6	B	315	318	parallel
Strand 7	B	309	312	anti-parallel

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There are 8 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	56	58	first strand
Strand 2	C	32	36	parallel
Strand 3	C	2	5	parallel
Strand 4	C	70	75	parallel
Strand 5	C	95	99	parallel
Strand 6	C	118	121	parallel
Strand 7	C	367	370	anti-parallel
Strand 8	C	373	374	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	163	165	first strand
Strand 2	C	168	170	anti-parallel

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There are 7 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	217	218	first strand
Strand 2	C	197	201	parallel
Strand 3	C	174	178	parallel
Strand 4	C	260	263	parallel
Strand 5	C	289	292	parallel
Strand 6	C	315	319	parallel
Strand 7	C	308	312	anti-parallel

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There are 8 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	56	58	first strand
Strand 2	D	32	36	parallel
Strand 3	D	2	5	parallel
Strand 4	D	70	72	parallel
Strand 5	D	95	98	parallel
Strand 6	D	118	121	parallel
Strand 7	D	367	370	anti-parallel
Strand 8	D	373	374	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	163	164	first strand
Strand 2	D	169	170	anti-parallel

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There are 7 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	217	218	first strand
Strand 2	D	197	201	parallel
Strand 3	D	174	178	parallel
Strand 4	D	260	263	parallel
Strand 5	D	289	292	parallel
Strand 6	D	315	319	parallel
Strand 7	D	308	312	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1F8G

Analysis of interatomic Contacts of Structural Units in PDB entry:
1F8G