Analysis of interatomic Contacts of Structural Units in PDB entry:
1F8V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1F8V entry

There are 7 chains in PDB entry 1F8V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
R
 U 1 U 25
A
 ASN 7ASN 361
D
 SER 362MET 401
B
 ASN 49ASN 361
E
 SER 362PRO 383
C
 ARG 51ASN 361
F
 SER 362PRO 383
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 1F8V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
53 65Right-handed alpha
Helix 2
2
A
137 143Right-handed alpha
Helix 3
3
A
218 222Right-handed 310
Helix 4
4
A
236 238Right-handed 310
Helix 5
5
A
278 282Right-handed 310
Helix 6
6
A
327 331Right-handed 310
Helix 7
7
A
338 349Right-handed alpha
Helix 8
8
D
362 375Right-handed alpha
Helix 9
9
B
53 65Right-handed alpha
Helix 10
10
B
66 69Right-handed 310
Helix 11
11
B
137 143Right-handed alpha
Helix 12
12
B
144 148Right-handed 310
Helix 13
13
B
218 222Right-handed 310
Helix 14
14
B
236 238Right-handed 310
Helix 15
15
B
278 282Right-handed 310
Helix 16
16
B
327 331Right-handed 310
Helix 17
17
B
338 349Right-handed alpha
Helix 18
18
B
350 352Right-handed 310
Helix 19
19
B
357 361Right-handed 310
Helix 20
20
E
363 375Right-handed alpha
Helix 21
21
C
53 66Right-handed alpha
Helix 22
22
C
67 69Right-handed 310
Helix 23
23
C
137 143Right-handed alpha
Helix 24
24
C
218 222Right-handed 310
Helix 25
25
C
236 238Right-handed 310
Helix 26
26
C
278 282Right-handed 310
Helix 27
27
C
325 331Right-handed 310
Helix 28
28
C
338 349Right-handed alpha
Helix 29
29
C
357 361Right-handed 310
Helix 30
30
F
363 375Right-handed alpha
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There are 10 sheets in PDB entry 1F8V. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 48first strand
Strand 2
E
379 381parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 242first strand
Strand 2
A
156 170anti-parallel
Strand 3
A
307 321anti-parallel
Strand 4
A
84 98anti-parallel
Strand 5
A
332 333anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 234first strand
Strand 2
A
180 186anti-parallel
Strand 3
A
294 301anti-parallel
Strand 4
A
102 108anti-parallel
Strand 5
A
114 121anti-parallel
Strand 6
A
129 134anti-parallel
Strand 7
A
274 276parallel
Strand 8
A
260 262anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 217first strand
Strand 2
A
189 200anti-parallel
Strand 3
B
256 257parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
256 257first strand
Strand 2
C
189 200parallel
Strand 3
C
207 217anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
239 242first strand
Strand 2
B
156 170anti-parallel
Strand 3
B
307 321anti-parallel
Strand 4
B
84 98anti-parallel
Strand 5
B
332 333anti-parallel
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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
231 234first strand
Strand 2
B
180 186anti-parallel
Strand 3
B
294 301anti-parallel
Strand 4
B
102 108anti-parallel
Strand 5
B
114 121anti-parallel
Strand 6
B
129 134anti-parallel
Strand 7
B
274 276parallel
Strand 8
B
260 262anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
207 217first strand
Strand 2
B
189 200anti-parallel
Strand 3
C
256 257parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
239 242first strand
Strand 2
C
156 170anti-parallel
Strand 3
C
307 321anti-parallel
Strand 4
C
84 98anti-parallel
Strand 5
C
332 333anti-parallel
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There are 8 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
231 234first strand
Strand 2
C
180 186anti-parallel
Strand 3
C
294 301anti-parallel
Strand 4
C
102 108anti-parallel
Strand 5
C
114 121anti-parallel
Strand 6
C
129 134anti-parallel
Strand 7
C
274 276parallel
Strand 8
C
260 262anti-parallel
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