Analysis of interatomic Contacts of Structural Units in PDB entry:
1F9T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1F9T entry

There is 1 chain in PDB entry 1F9T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 385VAL 720
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 1F9T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
428 430Right-handed 310
Helix 2
2
A
447 453Right-handed alpha
Helix 3
3
A
455 461Right-handed alpha
Helix 4
4
A
462 465Right-handed 310
Helix 5
5
A
479 486Right-handed alpha
Helix 6
6
A
490 508Right-handed alpha
Helix 7
7
A
570 586Right-handed alpha
Helix 8
8
A
592 598Right-handed alpha
Helix 9
9
A
644 665Right-handed alpha
Helix 10
10
A
674 677Right-handed 310
Helix 11
11
A
678 684Right-handed alpha
Helix 12
12
A
684 689Right-handed alpha
Helix 13
13
A
703 705Right-handed 310
Helix 14
14
A
706 720Right-handed alpha
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There are 4 sheets in PDB entry 1F9T. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
440 442first strand
Strand 2
A
387 393parallel
Strand 3
A
693 700parallel
Strand 4
A
468 473parallel
Strand 5
A
617 626parallel
Strand 6
A
600 611anti-parallel
Strand 7
A
511 523anti-parallel
Strand 8
A
526 529anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
440 442first strand
Strand 2
A
387 393parallel
Strand 3
A
693 700parallel
Strand 4
A
468 473parallel
Strand 5
A
617 626parallel
Strand 6
A
600 611anti-parallel
Strand 7
A
511 523anti-parallel
Strand 8
A
566 567anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
406 410first strand
Strand 2
A
420 426anti-parallel
Strand 3
A
433 438anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
549 552first strand
Strand 2
A
557 560anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il