Analysis of interatomic Contacts of Structural Units in PDB entry:
1F9V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1F9V entry

There is 1 chain in PDB entry 1F9V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 385VAL 726
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 1F9V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
428 430Right-handed 310
Helix 2
2
A
447 460Right-handed alpha
Helix 3
3
A
461 465Right-handed 310
Helix 4
4
A
479 486Right-handed alpha
Helix 5
5
A
490 507Right-handed alpha
Helix 6
6
A
508 510Right-handed 310
Helix 7
7
A
570 572Right-handed 310
Helix 8
8
A
573 582Right-handed alpha
Helix 9
9
A
595 599Right-handed 310
Helix 10
10
A
634 638Right-handed 310
Helix 11
11
A
639 664Right-handed alpha
Helix 12
12
A
674 677Right-handed 310
Helix 13
13
A
678 685Right-handed alpha
Helix 14
14
A
684 689Right-handed alpha
Helix 15
15
A
703 705Right-handed 310
Helix 16
16
A
706 721Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 1F9V. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
440 442first strand
Strand 2
A
386 393parallel
Strand 3
A
693 700parallel
Strand 4
A
468 473parallel
Strand 5
A
617 626parallel
Strand 6
A
600 610anti-parallel
Strand 7
A
512 523anti-parallel
Strand 8
A
526 529anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
440 442first strand
Strand 2
A
386 393parallel
Strand 3
A
693 700parallel
Strand 4
A
468 473parallel
Strand 5
A
617 626parallel
Strand 6
A
600 610anti-parallel
Strand 7
A
512 523anti-parallel
Strand 8
A
566 567anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
406 410first strand
Strand 2
A
420 426anti-parallel
Strand 3
A
433 438anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
549 552first strand
Strand 2
A
557 560anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il