Analysis of interatomic Contacts of Structural Units in PDB entry:
1F9W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1F9W entry

There are 2 chains in PDB entry 1F9W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 385SER 722
B
 GLY 385SER 722
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 22 helices in PDB entry 1F9W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
447 460Right-handed alpha
Helix 2
2
A
461 465Right-handed 310
Helix 3
3
A
479 486Right-handed alpha
Helix 4
4
A
490 508Right-handed alpha
Helix 5
5
A
570 586Right-handed alpha
Helix 6
6
A
595 599Right-handed 310
Helix 7
7
A
644 664Right-handed alpha
Helix 8
8
A
678 685Right-handed alpha
Helix 9
9
A
686 689Right-handed 310
Helix 10
10
A
703 705Right-handed 310
Helix 11
11
A
706 721Right-handed alpha
Helix 12
12
B
447 460Right-handed alpha
Helix 13
13
B
461 465Right-handed 310
Helix 14
14
B
479 486Right-handed alpha
Helix 15
15
B
490 508Right-handed alpha
Helix 16
16
B
570 586Right-handed alpha
Helix 17
17
B
595 599Right-handed 310
Helix 18
18
B
644 664Right-handed alpha
Helix 19
19
B
678 685Right-handed alpha
Helix 20
20
B
686 689Right-handed 310
Helix 21
21
B
703 705Right-handed 310
Helix 22
22
B
706 721Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 1F9W. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
387 393first strand
Strand 2
A
692 700parallel
Strand 3
A
467 473parallel
Strand 4
A
618 626parallel
Strand 5
A
600 609anti-parallel
Strand 6
A
514 523anti-parallel
Strand 7
A
526 528anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
387 393first strand
Strand 2
A
692 700parallel
Strand 3
A
467 473parallel
Strand 4
A
618 626parallel
Strand 5
A
600 609anti-parallel
Strand 6
A
514 523anti-parallel
Strand 7
A
566 567anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
421 424first strand
Strand 2
A
434 437anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
549 552first strand
Strand 2
A
557 560anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
387 393first strand
Strand 2
B
692 700parallel
Strand 3
B
467 473parallel
Strand 4
B
618 626parallel
Strand 5
B
600 609anti-parallel
Strand 6
B
514 523anti-parallel
Strand 7
B
526 528anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
387 393first strand
Strand 2
B
692 700parallel
Strand 3
B
467 473parallel
Strand 4
B
618 626parallel
Strand 5
B
600 609anti-parallel
Strand 6
B
514 523anti-parallel
Strand 7
B
566 567anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
421 424first strand
Strand 2
B
434 437anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
549 552first strand
Strand 2
B
557 560anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il