Analysis of interatomic Contacts of Structural Units in PDB entry:
1FCM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1FCM entry

There are 2 chains in PDB entry 1FCM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1GLN 358
B
 ALA 1GLN 358
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 1FCM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 21Right-handed alpha
Helix 2
2
A
62 77Right-handed alpha
Helix 3
3
A
86 89Right-handed 310
Helix 4
4
A
95 99Right-handed 310
Helix 5
5
A
102 108Right-handed alpha
Helix 6
6
A
124 135Right-handed alpha
Helix 7
7
A
148 160Right-handed alpha
Helix 8
8
A
166 175Right-handed alpha
Helix 9
9
A
189 195Right-handed 310
Helix 10
10
A
213 218Right-handed alpha
Helix 11
11
A
223 236Right-handed alpha
Helix 12
12
A
237 240Right-handed 310
Helix 13
13
A
242 253Right-handed alpha
Helix 14
14
A
342 356Right-handed alpha
Helix 15
15
B
2 20Right-handed alpha
Helix 16
16
B
62 77Right-handed alpha
Helix 17
17
B
86 89Right-handed 310
Helix 18
18
B
95 99Right-handed 310
Helix 19
19
B
102 108Right-handed alpha
Helix 20
20
B
124 135Right-handed alpha
Helix 21
21
B
148 160Right-handed alpha
Helix 22
22
B
166 175Right-handed alpha
Helix 23
23
B
189 193Right-handed 310
Helix 24
24
B
213 219Right-handed alpha
Helix 25
25
B
223 236Right-handed alpha
Helix 26
26
B
237 240Right-handed 310
Helix 27
27
B
242 253Right-handed alpha
Helix 28
28
B
276 282Right-handed alpha
Helix 29
29
B
285 290Right-handed alpha
Helix 30
30
B
327 329Right-handed 310
Helix 31
31
B
342 357Right-handed alpha
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There are 8 sheets in PDB entry 1FCM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 50first strand
Strand 2
A
34 44anti-parallel
Strand 3
A
24 31anti-parallel
Strand 4
A
331 337anti-parallel
Strand 5
A
320 326anti-parallel
Strand 6
A
308 315anti-parallel
Strand 7
A
269 272anti-parallel
Strand 8
A
262 264anti-parallel
Strand 9
A
255 259anti-parallel
Strand 10
A
296 302anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 58first strand
Strand 2
A
221 222anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 146first strand
Strand 2
A
292 294anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 201first strand
Strand 2
A
204 206anti-parallel
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There are 10 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 50first strand
Strand 2
B
34 44anti-parallel
Strand 3
B
24 31anti-parallel
Strand 4
B
331 337anti-parallel
Strand 5
B
320 326anti-parallel
Strand 6
B
308 315anti-parallel
Strand 7
B
269 272anti-parallel
Strand 8
B
262 264anti-parallel
Strand 9
B
255 259anti-parallel
Strand 10
B
296 302anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 58first strand
Strand 2
B
221 222anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
144 145first strand
Strand 2
B
293 294anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
199 201first strand
Strand 2
B
204 206anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il