Analysis of interatomic Contacts of Structural Units in PDB entry:
1FDJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1FDJ entry

There are 4 chains in PDB entry 1FDJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1001TYR 1363
B
 ALA 2001TYR 2363
C
 ALA 3001TYR 3363
D
 ALA 4001TYR 4363
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 65 helices in PDB entry 1FDJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1008 1024Right-handed alpha
Helix 2
2
A
1025 1027Right-handed 310
Helix 3
3
A
1035 1046Right-handed alpha
Helix 4
4
A
1051 1064Right-handed alpha
Helix 5
5
A
1066 1071Right-handed 310
Helix 6
6
A
1079 1084Right-handed alpha
Helix 7
7
A
1092 1100Right-handed alpha
Helix 8
8
A
1129 1140Right-handed alpha
Helix 9
9
A
1159 1180Right-handed alpha
Helix 10
10
A
1197 1219Right-handed alpha
Helix 11
11
A
1222 1226Right-handed 310
Helix 12
12
A
1244 1258Right-handed alpha
Helix 13
13
A
1275 1289Right-handed alpha
Helix 14
14
A
1302 1314Right-handed alpha
Helix 15
15
A
1316 1318Right-handed 310
Helix 16
16
A
1319 1338Right-handed alpha
Helix 17
17
B
2008 2024Right-handed alpha
Helix 18
18
B
2025 2027Right-handed 310
Helix 19
19
B
2035 2046Right-handed alpha
Helix 20
20
B
2051 2064Right-handed alpha
Helix 21
21
B
2066 2071Right-handed 310
Helix 22
22
B
2079 2085Right-handed 310
Helix 23
23
B
2092 2100Right-handed alpha
Helix 24
24
B
2129 2140Right-handed alpha
Helix 25
25
B
2159 2180Right-handed alpha
Helix 26
26
B
2197 2219Right-handed alpha
Helix 27
27
B
2222 2226Right-handed 310
Helix 28
28
B
2244 2260Right-handed alpha
Helix 29
29
B
2275 2288Right-handed alpha
Helix 30
30
B
2302 2314Right-handed alpha
Helix 31
31
B
2316 2318Right-handed 310
Helix 32
32
B
2319 2338Right-handed alpha
Helix 33
33
B
2354 2358Right-handed 310
Helix 34
34
C
3008 3024Right-handed alpha
Helix 35
35
C
3025 3027Right-handed 310
Helix 36
36
C
3035 3046Right-handed alpha
Helix 37
37
C
3051 3064Right-handed alpha
Helix 38
38
C
3066 3071Right-handed 310
Helix 39
39
C
3081 3085Right-handed 310
Helix 40
40
C
3092 3100Right-handed alpha
Helix 41
41
C
3129 3140Right-handed alpha
Helix 42
42
C
3159 3180Right-handed alpha
Helix 43
43
C
3197 3219Right-handed alpha
Helix 44
44
C
3222 3226Right-handed 310
Helix 45
45
C
3244 3260Right-handed alpha
Helix 46
46
C
3275 3289Right-handed alpha
Helix 47
47
C
3302 3314Right-handed alpha
Helix 48
48
C
3316 3318Right-handed 310
Helix 49
49
C
3319 3338Right-handed alpha
Helix 50
50
D
4008 4024Right-handed alpha
Helix 51
51
D
4025 4027Right-handed 310
Helix 52
52
D
4035 4045Right-handed alpha
Helix 53
53
D
4051 4064Right-handed alpha
Helix 54
54
D
4066 4071Right-handed 310
Helix 55
55
D
4080 4085Right-handed 310
Helix 56
56
D
4092 4100Right-handed alpha
Helix 57
57
D
4129 4140Right-handed alpha
Helix 58
58
D
4159 4180Right-handed alpha
Helix 59
59
D
4197 4219Right-handed alpha
Helix 60
60
D
4222 4226Right-handed 310
Helix 61
61
D
4244 4258Right-handed alpha
Helix 62
62
D
4275 4289Right-handed alpha
Helix 63
63
D
4302 4314Right-handed alpha
Helix 64
64
D
4316 4318Right-handed 310
Helix 65
65
D
4319 4338Right-handed alpha
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There are 8 sheets in PDB entry 1FDJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1028 1032first strand
Strand 2
A
1073 1078parallel
Strand 3
A
1103 1107parallel
Strand 4
A
1144 1151parallel
Strand 5
A
1183 1190parallel
Strand 6
A
1227 1228parallel
Strand 7
A
1266 1269parallel
Strand 8
A
1296 1301parallel
Strand 9
A
1028 1032parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1112 1114first strand
Strand 2
A
1122 1124anti-parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2028 2031first strand
Strand 2
B
2073 2078parallel
Strand 3
B
2103 2107parallel
Strand 4
B
2144 2151parallel
Strand 5
B
2183 2190parallel
Strand 6
B
2227 2228parallel
Strand 7
B
2266 2269parallel
Strand 8
B
2296 2301parallel
Strand 9
B
2028 2031parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2112 2114first strand
Strand 2
B
2122 2124anti-parallel
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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3028 3032first strand
Strand 2
C
3073 3078parallel
Strand 3
C
3103 3107parallel
Strand 4
C
3144 3151parallel
Strand 5
C
3183 3190parallel
Strand 6
C
3227 3228parallel
Strand 7
C
3266 3269parallel
Strand 8
C
3296 3301parallel
Strand 9
C
3028 3032parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3112 3114first strand
Strand 2
C
3122 3124anti-parallel
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There are 9 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
4028 4031first strand
Strand 2
D
4073 4078parallel
Strand 3
D
4103 4107parallel
Strand 4
D
4144 4151parallel
Strand 5
D
4183 4190parallel
Strand 6
D
4227 4228parallel
Strand 7
D
4266 4270parallel
Strand 8
D
4296 4301parallel
Strand 9
D
4028 4031parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
4112 4114first strand
Strand 2
D
4122 4124anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il