Analysis of interatomic Contacts of Structural Units in PDB entry:
1FDO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1FDO entry

There is 1 chain in PDB entry 1FDO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 715
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 1FDO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
H1
A
43 47Right-handed alpha
Helix 2
G1
A
50 53Right-handed 310
Helix 3
H2
A
80 98Right-handed alpha
Helix 4
H3
A
114 128Right-handed alpha
Helix 5
G2
A
136 139Right-handed 310
Helix 6
H4
A
142 152Right-handed alpha
Helix 7
G3
A
161 166Right-handed 310
Helix 8
H5
A
177 180Right-handed alpha
Helix 9
H6
A
182 193Right-handed alpha
Helix 10
G4
A
207 211Right-handed 310
Helix 11
H7
A
223 236Right-handed alpha
Helix 12
H8
A
242 248Right-handed alpha
Helix 13
H9
A
252 259Right-handed alpha
Helix 14
H10
A
264 271Right-handed alpha
Helix 15
H11
A
275 287Right-handed alpha
Helix 16
H12
A
297 300Right-handed alpha
Helix 17
H13
A
305 319Right-handed alpha
Helix 18
H14
A
338 343Right-handed alpha
Helix 19
H15
A
360 369Right-handed alpha
Helix 20
H16
A
386 391Right-handed alpha
Helix 21
H17
A
405 408Right-handed alpha
Helix 22
H18
A
412 421Right-handed alpha
Helix 23
H19
A
434 437Right-handed alpha
Helix 24
H20
A
478 488Right-handed alpha
Helix 25
H21
A
498 508Right-handed alpha
Helix 26
H22
A
517 520Right-handed alpha
Helix 27
H23
A
591 594Right-handed alpha
Helix 28
H24
A
596 601Right-handed alpha
Helix 29
H25
A
612 618Right-handed alpha
Helix 30
G5
A
661 664Right-handed 310
Helix 31
H26
A
691 715Right-handed alpha
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There are 5 sheets in PDB entry 1FDO. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 7first strand
Strand 2
A
16 21anti-parallel
Strand 3
A
26 31anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 68first strand
Strand 2
A
441 444anti-parallel
Strand 3
A
424 429parallel
Strand 4
A
397 401parallel
Strand 5
A
103 106parallel
Strand 6
A
133 134parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 216first strand
Strand 2
A
197 201parallel
Strand 3
A
169 173parallel
Strand 4
A
291 295parallel
Strand 5
A
329 331parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
453 456first strand
Strand 2
A
461 465anti-parallel
Strand 3
A
526 527anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
575 579first strand
Strand 2
A
649 652parallel
Strand 3
A
607 611anti-parallel
Strand 4
A
634 642parallel
Strand 5
A
625 629anti-parallel
Strand 6
A
680 687anti-parallel
Strand 7
A
575 579anti-parallel
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