Analysis of interatomic Contacts of Structural Units in PDB entry:
1FJ2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1FJ2 entry

There are 2 chains in PDB entry 1FJ2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET -5ILE 224
B
 MET -5ILE 224
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 1FJ2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
-4 3Right-handed 310
Helix 2
2
A
28 38Right-handed alpha
Helix 3
3
A
57 60Right-handed 310
Helix 4
4
A
80 101Right-handed alpha
Helix 5
5
A
104 106Right-handed 310
Helix 6
6
A
114 125Right-handed alpha
Helix 7
7
A
143 147Right-handed 310
Helix 8
8
A
173 188Right-handed alpha
Helix 9
9
A
189 191Right-handed 310
Helix 10
10
A
206 221Right-handed alpha
Helix 11
11
B
-3 2Right-handed 310
Helix 12
12
B
28 38Right-handed alpha
Helix 13
13
B
57 60Right-handed 310
Helix 14
14
B
80 101Right-handed alpha
Helix 15
15
B
104 106Right-handed 310
Helix 16
16
B
114 127Right-handed alpha
Helix 17
17
B
143 147Right-handed 310
Helix 18
18
B
173 188Right-handed alpha
Helix 19
19
B
189 191Right-handed 310
Helix 20
20
B
206 221Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 1FJ2. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 9first strand
Strand 2
A
44 48anti-parallel
Strand 3
A
17 22parallel
Strand 4
A
108 113parallel
Strand 5
A
133 137parallel
Strand 6
A
161 166parallel
Strand 7
A
193 198parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 55first strand
Strand 2
A
63 65anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 9first strand
Strand 2
B
44 48anti-parallel
Strand 3
B
17 22parallel
Strand 4
B
108 113parallel
Strand 5
B
133 137parallel
Strand 6
B
161 166parallel
Strand 7
B
193 198parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 55first strand
Strand 2
B
63 65anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il