Analysis of interatomic Contacts of Structural Units in PDB entry:
1FJ4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1FJ4 entry

There are 4 chains in PDB entry 1FJ4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2LEU 404
B
 LYS 2LEU 404
C
 LYS 2LEU 404
D
 LYS 2LEU 404
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 80 helices in PDB entry 1FJ4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 29Right-handed alpha
Helix 2
2
A
36 43Right-handed alpha
Helix 3
3
A
61 66Right-handed alpha
Helix 4
4
A
69 87Right-handed alpha
Helix 5
5
A
89 94Right-handed alpha
Helix 6
6
A
109 121Right-handed alpha
Helix 7
7
A
125 130Right-handed alpha
Helix 8
8
A
132 138Right-handed alpha
Helix 9
9
A
140 148Right-handed alpha
Helix 10
10
A
161 163Right-handed 310
Helix 11
11
A
164 179Right-handed alpha
Helix 12
12
A
194 204Right-handed alpha
Helix 13
13
A
214 218Right-handed 310
Helix 14
14
A
243 249Right-handed alpha
Helix 15
15
A
274 286Right-handed alpha
Helix 16
16
A
302 318Right-handed alpha
Helix 17
17
A
327 332Right-handed alpha
Helix 18
18
A
334 336Right-handed 310
Helix 19
19
A
337 353Right-handed alpha
Helix 20
20
A
365 369Right-handed 310
Helix 21
21
B
18 29Right-handed alpha
Helix 22
22
B
36 42Right-handed alpha
Helix 23
23
B
61 66Right-handed alpha
Helix 24
24
B
69 86Right-handed alpha
Helix 25
25
B
89 94Right-handed alpha
Helix 26
26
B
109 121Right-handed alpha
Helix 27
27
B
125 130Right-handed alpha
Helix 28
28
B
132 138Right-handed alpha
Helix 29
29
B
140 148Right-handed alpha
Helix 30
30
B
161 163Right-handed 310
Helix 31
31
B
164 179Right-handed alpha
Helix 32
32
B
194 203Right-handed alpha
Helix 33
33
B
214 218Right-handed 310
Helix 34
34
B
243 250Right-handed alpha
Helix 35
35
B
276 286Right-handed alpha
Helix 36
36
B
302 318Right-handed alpha
Helix 37
37
B
327 332Right-handed alpha
Helix 38
38
B
334 336Right-handed 310
Helix 39
39
B
337 353Right-handed alpha
Helix 40
40
B
365 369Right-handed 310
Helix 41
41
C
18 29Right-handed alpha
Helix 42
42
C
36 42Right-handed alpha
Helix 43
43
C
61 66Right-handed alpha
Helix 44
44
C
69 86Right-handed alpha
Helix 45
45
C
89 94Right-handed alpha
Helix 46
46
C
109 121Right-handed alpha
Helix 47
47
C
124 130Right-handed alpha
Helix 48
48
C
132 138Right-handed alpha
Helix 49
49
C
140 148Right-handed alpha
Helix 50
50
C
161 163Right-handed 310
Helix 51
51
C
164 179Right-handed alpha
Helix 52
52
C
194 203Right-handed alpha
Helix 53
53
C
214 218Right-handed 310
Helix 54
54
C
243 249Right-handed alpha
Helix 55
55
C
274 286Right-handed alpha
Helix 56
56
C
302 318Right-handed alpha
Helix 57
57
C
327 332Right-handed alpha
Helix 58
58
C
334 336Right-handed 310
Helix 59
59
C
337 353Right-handed alpha
Helix 60
60
C
365 369Right-handed 310
Helix 61
61
D
18 29Right-handed alpha
Helix 62
62
D
36 43Right-handed alpha
Helix 63
63
D
61 66Right-handed alpha
Helix 64
64
D
69 87Right-handed alpha
Helix 65
65
D
89 94Right-handed alpha
Helix 66
66
D
109 122Right-handed alpha
Helix 67
67
D
125 130Right-handed alpha
Helix 68
68
D
132 138Right-handed alpha
Helix 69
69
D
140 148Right-handed alpha
Helix 70
70
D
161 163Right-handed 310
Helix 71
71
D
164 179Right-handed alpha
Helix 72
72
D
194 204Right-handed alpha
Helix 73
73
D
214 218Right-handed 310
Helix 74
74
D
243 249Right-handed alpha
Helix 75
75
D
274 286Right-handed alpha
Helix 76
76
D
302 318Right-handed alpha
Helix 77
77
D
327 332Right-handed alpha
Helix 78
78
D
334 336Right-handed 310
Helix 79
79
D
337 353Right-handed alpha
Helix 80
80
D
365 369Right-handed 310
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There are 11 sheets in PDB entry 1FJ4. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 16 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
372 373first strand
Strand 2
A
323 325parallel
Strand 3
A
294 296parallel
Strand 4
A
384 391parallel
Strand 5
A
395 402anti-parallel
Strand 6
A
255 264anti-parallel
Strand 7
A
4 12anti-parallel
Strand 8
A
234 242anti-parallel
Strand 9
A
184 191anti-parallel
Strand 10
A
99 104parallel
Strand 11
A
156 160parallel
Strand 12
B
156 160anti-parallel
Strand 13
B
99 104parallel
Strand 14
B
184 191parallel
Strand 15
B
234 242anti-parallel
Strand 16
B
4 12anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 35first strand
Strand 2
A
48 49anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
354 355first strand
Strand 2
A
378 379anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 35first strand
Strand 2
B
48 49anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
256 264first strand
Strand 2
B
395 402anti-parallel
Strand 3
B
384 391anti-parallel
Strand 4
B
294 296parallel
Strand 5
B
323 325parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
354 355first strand
Strand 2
B
378 379anti-parallel
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There are 21 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
372 373first strand
Strand 2
C
323 325parallel
Strand 3
C
294 296parallel
Strand 4
C
384 391parallel
Strand 5
C
395 402anti-parallel
Strand 6
C
255 264anti-parallel
Strand 7
C
4 12anti-parallel
Strand 8
C
234 242anti-parallel
Strand 9
C
184 191anti-parallel
Strand 10
C
99 104parallel
Strand 11
C
156 160parallel
Strand 12
D
156 160anti-parallel
Strand 13
D
99 104parallel
Strand 14
D
184 191parallel
Strand 15
D
234 242anti-parallel
Strand 16
D
4 12anti-parallel
Strand 17
D
255 264anti-parallel
Strand 18
D
395 402anti-parallel
Strand 19
D
384 391anti-parallel
Strand 20
D
294 296parallel
Strand 21
D
323 325parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
34 35first strand
Strand 2
C
48 49anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
354 355first strand
Strand 2
C
378 379anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
34 35first strand
Strand 2
D
48 49anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
354 355first strand
Strand 2
D
378 379anti-parallel
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